Ggra6578.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6578.t1
Unique NameGgra6578.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Homology
The following BLAST results are available for this feature:
BLAST of Ggra6578.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 343..366
e-value: 0.02
score: 24.0
coord: 313..337
e-value: 12.0
score: 12.6
coord: 284..307
e-value: 0.42
score: 19.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 345..366
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 315..337
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 286..307
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 343..366
score: 11.468431
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 313..342
score: 10.159096
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 284..312
score: 11.260599
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 260..339
e-value: 3.6E-10
score: 41.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 341..374
e-value: 1.6E-6
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..412
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..82
NoneNo IPR availablePANTHERPTHR24399:SF52RCG58974-RELATEDcoord: 267..362
NoneNo IPR availablePANTHERPTHR24399ZINC FINGER AND BTB DOMAIN-CONTAININGcoord: 268..367
NoneNo IPR availablePANTHERPTHR24399:SF52RCG58974-RELATEDcoord: 268..367
NoneNo IPR availablePANTHERPTHR24399ZINC FINGER AND BTB DOMAIN-CONTAININGcoord: 267..362
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 318..363
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 282..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:323126..324364 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6578.t1Ggra6578.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 323126..324364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6578.t1 ID=Ggra6578.t1|Name=Ggra6578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MGSLPKLSIEGILNADVDNSLVSPVTPATIDNQTGSGGKESGTGNRPFGG
LPVSALVNEKDDEAPAPYPWENQPPVGAEPITPARPKFPSILYQMSEFVT
EFEERSVKGTLPSLKSLGLPTCKQLEALDGVSGGSTEDAHAKSLASAPKS
DENEATQTDEILAVEKRKNTVSEECAKEPEAPRRKRKRAELEAPIMTQSG
IENLIITLREKERSRNGKTSKDGASDSSEIQAQEDTENQSQSPASRSTEE
SSGREIPEISTGRVSKSKKHRRGRPNGDSRPRPHACPTCHRRFLQQSGVV
SHYRVVHLKEKRFECTHKCGLRFGARGDVTRHVDAVHNKLRNFECQVCGD
AFARKSILTRHCKNMHNDVFGEDEAHDCVHGCVYKAKNKGITKDDDHRET
KRRKTETSPERN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf