Ggra6574.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6574.t1
Unique NameGgra6574.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length618
Homology
BLAST of Ggra6574.t1 vs. uniprot
Match: A0A2V3IK20 (E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK20_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 3.470e-57
Identity = 92/115 (80.00%), Postives = 101/115 (87.83%), Query Frame = 0
Query:  503 LQIHYLHGFHGDHPSLDYEHLIRLDEQLIREKNRADNDQIDSLPVQKAAAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCLHHDS 617
            ++IHYL G HGD  +LDYEHLIRLDEQL+REKNRADNDQI+SLP +KA AEDKE+RCCICMCDVEEGE LRVLPC HKYH+SCIDEWLTYNGCCPVDKKRIAP R R R   H+S
Sbjct:    1 MEIHYLQGLHGDR-ALDYEHLIRLDEQLLREKNRADNDQINSLPTRKATAEDKEVRCCICMCDVEEGEVLRVLPCSHKYHQSCIDEWLTYNGCCPVDKKRIAPRRSRGRGTAHES 114          
BLAST of Ggra6574.t1 vs. uniprot
Match: R7QS17 (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS17_CHOCR)

HSP 1 Score: 181 bits (458), Expect = 2.040e-45
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 0
Query:  518 LDYEHLIRLDEQLIREKNRADNDQIDSLPVQKAAAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRIAPSRPRRRCLHH 615
            LDYE+LIRLDEQL+R+KNRAD  QIDSLP+QKA   DKEIRCC+CMCDVEEGEELRVLPC HKYHK CIDEWLTYNGCCPVDKKRIAP R RRRC  H
Sbjct:  549 LDYENLIRLDEQLMRDKNRADTSQIDSLPMQKATTADKEIRCCVCMCDVEEGEELRVLPCSHKYHKKCIDEWLTYNGCCPVDKKRIAPPRSRRRCPAH 646          
BLAST of Ggra6574.t1 vs. uniprot
Match: F0ZRJ6 (RING-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZRJ6_DICPU)

HSP 1 Score: 82.0 bits (201), Expect = 2.740e-15
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:  514 DHPSLDYEHLIRLDEQLIREKNRADNDQIDSLPVQKA---AAEDKEIR-------CCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            D  S DY+ L+ LD+ +      A N +I  LPV K     A + E         CCIC+C++E GEE+R LPCKH +H +CID+WL  N  CPVDKK I
Sbjct:    4 DFTSNDYDLLLSLDDNI--NNKGATNTEIIKLPVHKIDKNQATNPENNGPTTNETCCICLCEMENGEEVRTLPCKHFFHVTCIDQWLKVNKVCPVDKKAI 101          
BLAST of Ggra6574.t1 vs. uniprot
Match: A0A7S1T786 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T786_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 5.800e-14
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 0
Query:  519 DYEHLIRLDEQLIREKNRADNDQIDSLPVQKAAAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            DYE L+RLDE++   +  A    + SLP   A A   E +CCIC+C+ EEGE ++ LPC H +H++C+D WL     CP+DK+ I
Sbjct:  261 DYETLVRLDERIPNNRG-AQATVLQSLPTSLATARMTEEQCCICLCNYEEGETVKRLPCLHVFHQTCVDAWLERQASCPIDKRSI 344          
BLAST of Ggra6574.t1 vs. uniprot
Match: F4PRR3 (RING-type domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRR3_CAVFA)

HSP 1 Score: 83.6 bits (205), Expect = 4.510e-13
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 0
Query:  499 GTPGLQIHYLHGFHGDHPSLDYEHLIRLDEQLIREKNRADNDQIDSLPVQKAAAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            G+  +  H+L+  + D  S DYE L++LDE +  +  +A   +I  LP  K     K   CCIC+C++E G+ ++ LPC H +H  CID WL  N  CP+DK+ I
Sbjct:  570 GSQQIDPHHLNLMNRDFTSNDYELLLQLDENVNNKGAQAT--EIKQLPTHKIKTGSKIDTCCICLCEMEIGQNVKSLPCTHYFHTECIDNWLKINKICPIDKQSI 672          
BLAST of Ggra6574.t1 vs. uniprot
Match: A0A0L0DPZ4 (RING-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPZ4_THETB)

HSP 1 Score: 74.3 bits (181), Expect = 9.720e-12
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 0
Query:  519 DYEHLIRLDEQLIREKNRADNDQIDSLPVQKAAAEDKEI---RCCICMCDVEEGEELRVLPC--KHKYHKSCIDEWLTYNGCCPVDKKRI 603
            DY  L+RLDE + +     D D + +LP     A D      RC +C+ D+ EG E+R+LPC  KH +H +CID+WL  +G CPVDK  +
Sbjct:   88 DYSRLLRLDETVTKPTAATDAD-LAALPPPTTLAADSSYCGERCTVCLDDLTEGTEVRILPCAGKHAFHTACIDQWLRVDGVCPVDKSLV 176          
BLAST of Ggra6574.t1 vs. uniprot
Match: V4CC02 (RING-type domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4CC02_LOTGI)

HSP 1 Score: 70.9 bits (172), Expect = 1.640e-11
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 0
Query:  520 YEHLIRLDEQL--IREKNRADNDQIDSLPVQKAAAEDK----EIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPV 598
            Y+ L++L E++  +++K   +N+QI+ LP++K    DK    +  C ICMC+ E+ + LR+LPC H +H  C+D+WLT N  CPV
Sbjct:    1 YDVLLQLAERMGDVQQKG-INNNQINRLPIKKFKKYDKNNSVDEECSICMCEYEDNDCLRILPCFHCFHSGCVDKWLTNNASCPV 84          
BLAST of Ggra6574.t1 vs. uniprot
Match: Q54C66 (RING-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54C66_DICDI)

HSP 1 Score: 77.8 bits (190), Expect = 3.230e-11
Identity = 50/132 (37.88%), Postives = 66/132 (50.00%), Query Frame = 0
Query:  496 QAGGTPGLQIHYLHGFHGDHPSLDYEHLIRLDEQLIREKNRADNDQIDSLPVQ---KAAAEDK---------------------EIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            QA    GL    L+    D  S DYE L++LDE  I  K    +D I++LPV    K  A                        ++ CCIC+C++E G+ +R LPCKH +H SCID+WL  N  CP+DKK I
Sbjct:  634 QAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDEN-INNKGATTSD-IENLPVHTLNKPTATXXXXXXXXXXXXXXXXXXXEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAI 763          
BLAST of Ggra6574.t1 vs. uniprot
Match: A0A1R2C6I9 (RING-type domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C6I9_9CILI)

HSP 1 Score: 69.7 bits (169), Expect = 1.440e-10
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 0
Query:  540 DQIDSLPVQKAAAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            +QI++LP  KA  ED    CCIC+ D++  E+L +LPC HKYH +C+D W      CP+ K RI
Sbjct:   76 EQIEALPHVKAVDEDS---CCICLDDIKLDEDLTILPCTHKYHSTCVDNWFLIKPLCPICKTRI 136          
BLAST of Ggra6574.t1 vs. uniprot
Match: A0A8J4V8Q1 (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V8Q1_9MYCE)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-10
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 0
Query:  517 SLDYEHLIRLDEQLIREKNRADNDQIDSLPVQK------AAAEDKEIR-----------CCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDKKRI 603
            S DY+ L++LDE +      AD D I  LPV K       AA                 CCIC+C++E G++++ LPC H +H  CID+WL  N  CP+DKK I
Sbjct:  488 SNDYDLLLQLDENV--NNKGADKDDIKRLPVHKLYNAPSTAAXXXXXXXXXXXXXSTQTCCICLCEMESGQQVKTLPCLHIFHVECIDQWLMINKVCPIDKKSI 589          
The following BLAST results are available for this feature:
BLAST of Ggra6574.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK203.470e-5780.00E3 ubiquitin-protein ligase RNF38 n=1 Tax=Gracilar... [more]
R7QS172.040e-4583.67RING-type domain-containing protein n=1 Tax=Chondr... [more]
F0ZRJ62.740e-1545.00RING-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A7S1T7865.800e-1444.71Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
F4PRR34.510e-1339.05RING-type domain-containing protein n=1 Tax=Cavend... [more]
A0A0L0DPZ49.720e-1242.22RING-type domain-containing protein n=1 Tax=Thecam... [more]
V4CC021.640e-1141.18RING-type domain-containing protein (Fragment) n=1... [more]
Q54C663.230e-1137.88RING-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A1R2C6I91.440e-1046.88RING-type domain-containing protein n=1 Tax=Stento... [more]
A0A8J4V8Q11.830e-1039.42Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 559..599
e-value: 1.9E-5
score: 34.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 558..598
e-value: 1.5E-9
score: 38.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 559..600
score: 11.058237
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 524..606
e-value: 1.2E-17
score: 65.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..405
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..405
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..362
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 244..604
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 559..598
e-value: 2.09506E-16
score: 71.1789
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 553..606

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:309696..311667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6574.t1Ggra6574.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 309696..311667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6574.t1 ID=Ggra6574.t1|Name=Ggra6574.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=618bp
MPTSSSSKPCSPPPPRDRRLAPDNVIVLDTSLPRATTSSIEPIVIDEAPR
KRRRRDQSSHPPSTTPVSHPPHVIIVDDSDSPPIPPSMLAFRGRETQTTR
LNNPRIHVHPRDPPSSRCEEEIIEMAVSGPRLAPVRSPPSPPNLASANHS
FLVEPILSMTPPLPPRTQRQSMPTVPELINSPVALTSLTNPVPSEHLPAQ
PLQLPSIPSALNQPSPQHNNTSQPQYVSRLVDIDQILTRNPRMSSHRARE
SDGTRVASALRTSLNQGLHSHRSPLRHNPSLSRRYVHLERDQVASLGDVP
APGFVRTSSSRRQYATPTDRPSRYGTQFEPRFSSFLLSNQAHLSPLHRNQ
QSDTSQFSPSAAHPLETLARMSSLGNNPSPPPPESSRLFPDTRLHSRRHS
HMSNDVDDLSRLRHIQRRRDLQRARLSSRRTGTTRPVMRASMAAFASANN
TTAYGQERARRERPRTYARPSFAHTTLHRHSAPHHIAAVVHRMVHQAGGT
PGLQIHYLHGFHGDHPSLDYEHLIRLDEQLIREKNRADNDQIDSLPVQKA
AAEDKEIRCCICMCDVEEGEELRVLPCKHKYHKSCIDEWLTYNGCCPVDK
KRIAPSRPRRRCLHHDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD