Ggra6569.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6569.t1
Unique NameGgra6569.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length900
Homology
BLAST of Ggra6569.t1 vs. uniprot
Match: R7QMF4 (PBPb domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMF4_CHOCR)

HSP 1 Score: 420 bits (1080), Expect = 3.590e-133
Identity = 227/490 (46.33%), Postives = 301/490 (61.43%), Query Frame = 0
Query:  383 LLPIGLLLAACAVAA---FDELSGTRLLGCALVENPYVKLDHTQRLGYNGIAITYLYKLQQALQFRIDVHRWNRTWSEFIDHMNSC---VPPSNRDAFPSRPICDCDIGIGSFTMTNDRANRIQFVWPFSNEAHQMVSRRSDLLLDEGENRWFVFQTFSLNVWILIMACILLHALGTVFFSSFDADSHPPVRAPATHSRRYCCSISGFYYHCKRFPALVLHSYAHLIGQPIRESRMGTPSFHRSAWIVLGITTGLFLLTLYQASLTVLLFESKKSSPFRTLDDIVQCSIKPNRVAMLRGGASQDFWNKIVNTSFNRDNC-KWDSNAHVGITVSDLEQGFRFLTERKADYFYSLRGSVVFRAAINCREYVPVGEPFFSTSVAFVLPPTTN--QTIRRHLDNTTRFLREEDPFPTADALARANSCDDEVEATITLEKLMAFSIMYVGSWLFLVVYRCVFLWRRRRKQKEQRLVQEHPHMSVPKYPDGVIVDL 863
            LLP+  L  + A  A   FD L G  L+ C L+E+PY+  D  +R  Y GIAI Y  +L+  L F  +   WN  WS FI+ M+ C   VP SN++       C C IGIG+FTMTN+R  +IQFVWP  NEAH+MV R+SDL  D  +N WFVF TFSL VWI+I   +++HALG++ F  F        R+  TH RR      G  +  K+FPA +L +YAHL+G P  E   GTPSFHR+AW++LGIT GLFLLT+Y+ASLTVLLFES K S F+ L+DI  C++ P+R+AM+ GGASQ FW+  VNT+  R +C +W       +TV DL +GF  +   +AD+FYSL GS+V RA  NC  + PVGEPFFST+V FV+P      Q +   L   TR LRE+D F +   LA  +SC+D ++A IT  KL AF +MY   W  L++YR   L+  +RK+K+  L         P   D V++D+
Sbjct:    8 LLPVLCLAQSPATTANQRFDRLYGNHLVACVLLEDPYIIADQNRREQYRGIAIDYFRRLRDNLGFTAEFKEWNGNWSSFIETMSECEPNVPDSNKNK------CPCTIGIGAFTMTNERTEKIQFVWPLGNEAHRMVGRKSDLSSDNSQNTWFVFNTFSLQVWIIIAVGMVMHALGSLAFGPFQPSERDLPRS-TTHRRR-----RGIMWRIKKFPAAILFAYAHLLGHPFGEESQGTPSFHRTAWLMLGITAGLFLLTIYEASLTVLLFESTKESAFQRLEDIKSCALDPSRIAMIAGGASQAFWHSAVNTTEVRKDCPQW---GKFSMTVEDLAEGFEAVKSNRADFFYSLEGSIVIRAQKNCDVFAPVGEPFFSTAVGFVMPKNIESLQRVLDELSRETRILREQDGFESVSVLADRSSCEDVIDARITPSKLWAFFVMYALCWGGLLLYRISRLYIMKRKEKDDGL------RPTPNQGDIVLMDV 476          
BLAST of Ggra6569.t1 vs. uniprot
Match: A0A2V3IK74 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK74_9FLOR)

HSP 1 Score: 366 bits (940), Expect = 1.500e-114
Identity = 286/343 (83.38%), Postives = 303/343 (88.34%), Query Frame = 0
Query:    1 MPDMKIVYGDINKYARCGKVDVLIKPMAGRSACMGTVKIGPSQPGANGHTFIVIHAYVIHACTSGDYVDLTGLYKAFKCIRDKFSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHTVVVPKKKKSCKPKSTVVPDEECPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-CKPCRPSCGYVRININ---TGCNPCCDXXXXCDSCSGIKVNVNRGGCPTNCCDPCCRPSTKASSVKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVKSKCTTKPPXXCAPSSRKCCFKREKYCCPPLSKDPCDTSES 339
            MPDMKIVYGDI KYARCGKVD+L+KPM+GRSAC+GTVKIGPSQPGANGHTFI IHAYVIHAC+SGDYVDLTGLYKAFKCIRD+FSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHT+VVPKKKK C P+ +VVP+E CPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C+PCRPSCGYVRININ   TGCNPCCD XXX    SG+KV VN+  CPTNCC P    STKASSV+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXC P+ +KCCFKREKYCCPPLS DPCDT+ S
Sbjct:    1 MPDMKIVYGDIRKYARCGKVDILVKPMSGRSACLGTVKIGPSQPGANGHTFITIHAYVIHACSSGDYVDLTGLYKAFKCIRDRFSKLRIAYPKIGEGLKGPSWAVICRTINSALKCCHHTLVVPKKKKPC-PEPSVVPEEVCPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCRPCRPSCGYVRININNCNTGCNPCCDPXXXXXXXSGVKVVVNKR-CPTNCCKPXXXXSTKASSVQPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXCPPTVKKCCFKREKYCCPPLSADPCDTASS 335          
The following BLAST results are available for this feature:
BLAST of Ggra6569.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QMF43.590e-13346.33PBPb domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IK741.500e-11483.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 409..530
e-value: 3.4E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 866..899
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..283
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..535
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 647..808
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 621..646
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 809..832
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 536..559
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 560..620
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 833..899
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 415..780
NoneNo IPR availableTMHMMTMhelixcoord: 537..559
NoneNo IPR availableTMHMMTMhelixcoord: 621..643
NoneNo IPR availableTMHMMTMhelixcoord: 809..831
IPR043472Macro domain-likeSUPERFAMILY52949Macro domain-likecoord: 7..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:296729..300830 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6569.t1Ggra6569.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 296729..300830 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6569.t1 ID=Ggra6569.t1|Name=Ggra6569.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=900bp
MPDMKIVYGDINKYARCGKVDVLIKPMAGRSACMGTVKIGPSQPGANGHT
FIVIHAYVIHACTSGDYVDLTGLYKAFKCIRDKFSKLRIAYPKIGEGLKG
PSWAVICRTINSALKCCHHTVVVPKKKKSCKPKSTVVPDEECPEPEPCPE
PEPCPEPEPCPEPEPCPEPEPCPEPEPCPEPEPCPEPKPCPQPCKPCRPS
CGYVRININTGCNPCCDPCSPCDSCSGIKVNVNRGGCPTNCCDPCCRPST
KASSVKLSSKAPSTRPPTTKPPTTKPPSTKPPSSKPKSSSKKTSHKSVKS
KCTTKPPSSCAPSSRKCCFKREKYCCPPLSKDPCDTSESCNDCCDCRVLA
LSVVEALVRALTVLHRHDGEVVYTWLMRARARLLPIGLLLAACAVAAFDE
LSGTRLLGCALVENPYVKLDHTQRLGYNGIAITYLYKLQQALQFRIDVHR
WNRTWSEFIDHMNSCVPPSNRDAFPSRPICDCDIGIGSFTMTNDRANRIQ
FVWPFSNEAHQMVSRRSDLLLDEGENRWFVFQTFSLNVWILIMACILLHA
LGTVFFSSFDADSHPPVRAPATHSRRYCCSISGFYYHCKRFPALVLHSYA
HLIGQPIRESRMGTPSFHRSAWIVLGITTGLFLLTLYQASLTVLLFESKK
SSPFRTLDDIVQCSIKPNRVAMLRGGASQDFWNKIVNTSFNRDNCKWDSN
AHVGITVSDLEQGFRFLTERKADYFYSLRGSVVFRAAINCREYVPVGEPF
FSTSVAFVLPPTTNQTIRRHLDNTTRFLREEDPFPTADALARANSCDDEV
EATITLEKLMAFSIMYVGSWLFLVVYRCVFLWRRRRKQKEQRLVQEHPHM
SVPKYPDGVIVDLSDISNSNSNAQHGTDDDDNYSEPTSGSLMNSGRFEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043472Macro_dom-like