Ggra6453.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6453.t1
Unique NameGgra6453.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Homology
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BLAST of Ggra6453.t1 vs. uniprot
Match: A0A2V3J9U2 (PDZ domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9U2_9FLOR)

HSP 1 Score: 187 bits (474), Expect = 3.710e-56
Identity = 101/197 (51.27%), Postives = 133/197 (67.51%), Query Frame = 0 
Query:    2 SPPVHTSDSPEIPEFSMENKVEDSDEIFLPPGTKLVSLSLPLGVYTEQTADGQVFVDEVEEDGNAAKSGGLEVGDVIEAVSLPFGNGLFPVPKTGGVDMIADYISSRDPNESLFHIAVSKGNDVGSLRGRVGVEETWLSAEDAVKIAGKVHVTEYPVVTPE--IEEERDLESQTKELGEYGFDAESIKSILENKAQG 196
            +P V TSDSP+  E S     ++  ++ LPP T+LVSL LPLG++ +QT DG VFVDE+E DGNAAK G L  GDVI+AVSLPFGN LFPVP+  G+ MIA+Y+ SRD  E  FH+AVS+GNDV +LR R+  E    +A+ A ++A K+ V EYP+++PE    EE D  ++ K+L EYGFD ES+         G
Sbjct:   58 APHVRTSDSPQGQE-SFPVHTKEGIQVVLPPNTELVSLPLPLGIFLDQTTDGLVFVDELEPDGNAAKLGQLVEGDVIQAVSLPFGNNLFPVPEVNGLQMIAEYMRSRDKEEHFFHMAVSRGNDVEALRARLPTEIDVDTADSAFELATKIQVEEYPIISPEGMKAEEEDFATRMKQLREYGFDMESVTEAYGENGTG 253
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BLAST of Ggra6453.t1 vs. uniprot
Match: R7QE88 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE88_CHOCR)

HSP 1 Score: 107 bits (268), Expect = 1.940e-25
Identity = 66/174 (37.93%), Postives = 100/174 (57.47%), Query Frame = 0 
Query:   17 SMENKVEDSDEIFLP-PGT-----KLVSLSLPLGVYTEQTADGQVFVDEVEEDGNAAKSGGLEVGDVIEAVSLPFGNGLFPVPKTGGVDMIADYISSRDPNESLFHIAVSKGNDVGSLRGRVG-VEETWLSAEDAVKIA-GKVHVTEYPVVTPEIEEERDLESQTKELGEYGFD 182
            S + + ++ D   +P P T     ++VS+ LPL  Y E++A GQVF+DE+  DGN+AK+G +  GDVI AVSLPFG+ + P+ +T GV MI +++S+RD +E  F +A+     V  LR ++  + +  + A   V+    KV + EYP V    E+E       K L   GFD
Sbjct:   65 STDKEADEEDNFEIPDPQTILREARIVSVPLPLDAYLEESASGQVFIDELVPDGNSAKTGLISEGDVIVAVSLPFGDSMIPISRTSGVKMILEHVSTRDEDEEFFQLALISSPGVEVLRAQIQELTQQEIEAHKRVREGIDKVFIDEYPEVKRVSEDENTEAFDPKFLRREGFD 238
The following BLAST results are available for this feature:
BLAST of Ggra6453.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J9U23.710e-5651.27PDZ domain-containing protein n=1 Tax=Gracilariops... [more]
R7QE881.940e-2537.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 34..89
e-value: 1.7E-5
score: 26.7
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 47..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR001478PDZ domainPROSITEPS50106PDZcoord: 27..82
score: 9.8127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:164996..165586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6453.t1Ggra6453.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 164996..165586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6453.t1 ID=Ggra6453.t1|Name=Ggra6453.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MSPPVHTSDSPEIPEFSMENKVEDSDEIFLPPGTKLVSLSLPLGVYTEQT
ADGQVFVDEVEEDGNAAKSGGLEVGDVIEAVSLPFGNGLFPVPKTGGVDM
IADYISSRDPNESLFHIAVSKGNDVGSLRGRVGVEETWLSAEDAVKIAGK
VHVTEYPVVTPEIEEERDLESQTKELGEYGFDAESIKSILENKAQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ