Ggra6411.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6411.t1
Unique NameGgra6411.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Homology
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BLAST of Ggra6411.t1 vs. uniprot
Match: A0A2V3J6C4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6C4_9FLOR)

HSP 1 Score: 147 bits (372), Expect = 4.530e-44
Identity = 78/100 (78.00%), Postives = 83/100 (83.00%), Query Frame = 0 
Query:    1 MKIPEQVYSGMPSGINSAAALSLLVINVIMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRKHST-DAAPAPRTQDEETPLV 99
            MKIPEQVYSGMP G++S AAL +L INV  PGVGTIISAFL  ECM ETVFVG+LQL+TSPLLGLGF WAIAWSIRLYRKHST D  P   T DEETPLV
Sbjct:    1 MKIPEQVYSGMPRGLSSTAALVILAINVFAPGVGTIISAFLGTECMNETVFVGILQLLTSPLLGLGFFWAIAWSIRLYRKHSTADETPTSAT-DEETPLV 99
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BLAST of Ggra6411.t1 vs. uniprot
Match: D7FIX6 (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.950e-7
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:   12 PSGINSAAALSLLVINVIMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLY---RKH 81
            P  +    A  LLVINV +PG+GT+I+ FL   C  +++F G+LQL+T+ L+ +G++W++ W   L+   R+H
Sbjct:   11 PPVLRKPLAFVLLVINVFVPGLGTVIAGFLT--CKLKSIFTGILQLVTTSLV-VGWVWSVMWGWELWTLARRH 80
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BLAST of Ggra6411.t1 vs. uniprot
Match: R7Q4E7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4E7_CHOCR)

HSP 1 Score: 56.6 bits (135), Expect = 1.970e-7
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0 
Query:   23 LLVINVIMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRKHSTDAAPAPRTQDEE 95
            +L INV  PGVGT+I+  +  +    T+ VG+LQL+ S  L +G+IWAI WS+ LY+K +    P    Q  +
Sbjct:   40 ILAINVFFPGVGTMIAGCMGTKNNCSTITVGILQLLLSVFL-IGWIWAIIWSVMLYKKVAKQNVPTTHNQQTQ 111
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BLAST of Ggra6411.t1 vs. uniprot
Match: uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D057A31 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D057A31)

HSP 1 Score: 51.6 bits (122), Expect = 2.440e-6
Identity = 22/69 (31.88%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:   21 LSLLVINVIMPGVGTIISAFLAEECMQETVFVGVLQLITSPLLGLGFIWAIAWSIRLYRKHSTDAAPAP 89
            +++L++N+I PG+GT+++A ++++  + ++  G+LQ  TS LL +G+IW++ W I ++++++  A   P
Sbjct:   24 ITILILNIIFPGIGTLVAACVSKKKKKYSIIFGLLQFFTSFLL-VGWIWSVVWGIFMFKRNTGAAKLTP 91
The following BLAST results are available for this feature:
BLAST of Ggra6411.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J6C44.530e-4478.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
D7FIX61.950e-739.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R7Q4E71.970e-741.10Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D057A312.440e-631.88uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026673SPEC3/StumPFAMPF15795Spec3coord: 17..77
e-value: 6.6E-7
score: 29.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:111489..111815 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6411.t1Ggra6411.t1Gracilaria gracilis GNS1m malemRNAtig00000918_pilon 111489..111815 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6411.t1 ID=Ggra6411.t1|Name=Ggra6411.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MKIPEQVYSGMPSGINSAAALSLLVINVIMPGVGTIISAFLAEECMQETV
FVGVLQLITSPLLGLGFIWAIAWSIRLYRKHSTDAAPAPRTQDEETPLVS
SLPETPAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026673SPEC3/Stum