Ggra6403.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6403.t1
Unique NameGgra6403.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Homology
BLAST of Ggra6403.t1 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 206 bits (525), Expect = 1.090e-61
Identity = 104/248 (41.94%), Postives = 152/248 (61.29%), Query Frame = 0
Query:    1 MDIGTRTSGDQGQFREADIIESACQTTEQNWTIQSIGNVSLVNGDIRCSLQPAYRLNVIILTENHTLPMSGAELRCVTNKTCVFAFQRRNFIFFSIRMRKSFADDLISGKIQKELPHIKTELLFNAKGFLGTFAHRAASAFLQNLNDPYEISRRVFLGSAKTNCSFVTESVDATDVPNFVLYLLGATWILSMISYLILSLAGRNFFFAIDDPLHWAIYTNKKEGVMIQKNPILSYVKEANRDVLYVSE 248
            +D   R  G QG+FREAD IE  CQT   N+    +GNVSL +G +RCS + AY  +++  +E   LP+S AE+ C   +TCVF F+++N  +FS  +      +L SG +  E+  +KTELLF++   L  FA RA  AFL+ +NDP+E+ RRVFLGSAK NC FV E +D T VP  +LY L   WI++++ +++  +  R  FF + +PLHWAI   K+    ++ +P+++   E     LYVSE
Sbjct:   95 VDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASETKKLPVSTAEVSC-KGETCVFVFEQQNSTYFSGALLPDIVAELRSGAVDTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSE 341          
BLAST of Ggra6403.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 101 bits (251), Expect = 2.470e-21
Identity = 76/262 (29.01%), Postives = 127/262 (48.47%), Query Frame = 0
Query:    5 TRTSGDQG-QFREADIIESACQTTEQNWTIQSIGNVSLVNGDIRCS--------LQPAYRLNV---IILTENHTLP---MSGAELRCVTNKTCVFAFQRRNF-IFFSIRMRKSFADDLISGKIQKELPHIKTELLFNAKG---FLGTFAHRAASAFLQNLNDPYEISRRVFLGSAKTNCSFVTESVDATDVPNFVLYLLGATWILSMISYLILSLAGRNFFFAIDDPLHWAIYTNKKEGVMIQKNPILSYVKEANRDVLYVS 247
            TR SGD G    E  I+ S  +T E N  ++ +GN S+    + C+        L+P   L +     ++  +  P   +  A+  CV  +T  +     +  ++FS      FAD++   +I           +F+A+     L  FA R   A+ +NLNDP+E+ R +FLGS +  C F   S +AT+VP F++  +   W++S+ +Y +  L  R  F+ I +P+HWA  T ++    +  +P +S V E    V+YVS
Sbjct:   99 TRRSGDPGTSLEEIGIVLSCVKTNESNIFLR-VGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVF---FADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTS-EATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVS 355          
The following BLAST results are available for this feature:
BLAST of Ggra6403.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMC11.090e-6141.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A02.470e-2129.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..198
NoneNo IPR availableTMHMMTMhelixcoord: 179..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:66166..66921 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6403.t1Ggra6403.t1Gracilaria gracilis GNS1m malemRNAtig00000918_pilon 66166..66921 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6403.t1 ID=Ggra6403.t1|Name=Ggra6403.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDIGTRTSGDQGQFREADIIESACQTTEQNWTIQSIGNVSLVNGDIRCSL
QPAYRLNVIILTENHTLPMSGAELRCVTNKTCVFAFQRRNFIFFSIRMRK
SFADDLISGKIQKELPHIKTELLFNAKGFLGTFAHRAASAFLQNLNDPYE
ISRRVFLGSAKTNCSFVTESVDATDVPNFVLYLLGATWILSMISYLILSL
AGRNFFFAIDDPLHWAIYTNKKEGVMIQKNPILSYVKEANRDVLYVSEAP
Q*
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