Ggra6335.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6335.t1
Unique NameGgra6335.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length571
Homology
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A097IUQ2 (Malate dehydrogenase n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A097IUQ2_9FLOR)

HSP 1 Score: 289 bits (739), Expect = 9.160e-90
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            RGDVFG+DQPIELRLLEIKPALDALHGVVMEL+DCAFPLVRNIVETDDPMVAFQHADVTIL GSF RRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVG+PSNTNALVLSHFAPSIPKQNITALTRLDQNRA GQIAMRTGVNA+QV
Sbjct:   32 RGDVFGQDQPIELRLLEIKPALDALHGVVMELYDCAFPLVRNIVETDDPMVAFQHADVTILSGSFPRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGNPSNTNALVLSHFAPSIPKQNITALTRLDQNRAVGQIAMRTGVNADQV 184          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A097IUR9 (Malate dehydrogenase n=2 Tax=Gracilariaceae TaxID=31469 RepID=A0A097IUR9_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 3.110e-80
Identity = 133/153 (86.93%), Postives = 142/153 (92.81%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            RGDVFGRDQ IELRLLEIKPALDALHGVVMEL DC+FPL+  IVETDDPMVAFQHADVTIL GSF RRPGMERRDLIA+NV+IFKAQG ALD VASKNVKVVVVG+PSNTNALVLSHFAP+IPKQNITALTRLDQNRA GQ+A+RTGV  +QV
Sbjct:   32 RGDVFGRDQLIELRLLEIKPALDALHGVVMELRDCSFPLLTAIVETDDPMVAFQHADVTILAGSFPRRPGMERRDLIARNVSIFKAQGHALDSVASKNVKVVVVGNPSNTNALVLSHFAPTIPKQNITALTRLDQNRAVGQVALRTGVRVDQV 184          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A097IUP8 (Malate dehydrogenase n=2 Tax=Gracilariopsis TaxID=2781 RepID=A0A097IUP8_GRALE)

HSP 1 Score: 248 bits (633), Expect = 4.790e-74
Identity = 120/152 (78.95%), Postives = 137/152 (90.13%), Query Frame = 0
Query:  125 GDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            G+VFG +QPIELRLL+IKPAL+AL+GVVMELHDC+FPL+R IV TDDPMVAF+HADV +L GSF RRPGMERR+L+AKNVNIFKA G ALD+VASKNVK+VVVG+PSNTNALVLSHFAPSIPK NITALTRLD NR   Q+A+RTGV+ N V
Sbjct:   32 GEVFGHEQPIELRLLDIKPALEALNGVVMELHDCSFPLLRGIVATDDPMVAFRHADVAVLAGSFPRRPGMERRELLAKNVNIFKAHGHALDQVASKNVKIVVVGNPSNTNALVLSHFAPSIPKGNITALTRLDHNRTVSQVALRTGVSVNDV 183          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A433TZL7 (Malate dehydrogenase n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TZL7_ELYCH)

HSP 1 Score: 201 bits (512), Expect = 2.940e-56
Identity = 97/153 (63.40%), Postives = 121/153 (79.08%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            +GDVFG+DQP+EL LL+I P ++ L+GVVMEL DCA PLV+NIV TDDPMVAF+  D   + G+  RR GMER+DL+  NV IFKAQGQA+D+VA K VKV+VVG+P+NTN  +LS +APSIPK N T +TRLDQNRA  QIA + GV+ +QV
Sbjct:   26 KGDVFGKDQPLELLLLDITPMMEVLNGVVMELMDCAIPLVKNIVATDDPMVAFKDVDAAFMVGAMPRREGMERKDLLKANVKIFKAQGQAMDQVAKKTVKVIVVGNPANTNGCILSKYAPSIPKANFTCMTRLDQNRAQAQIAAKLGVSNDQV 178          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A3Q9JLD1 (Malate dehydrogenase n=1 Tax=Adamussium colbecki TaxID=95546 RepID=A0A3Q9JLD1_9BIVA)

HSP 1 Score: 198 bits (504), Expect = 4.410e-55
Identity = 95/153 (62.09%), Postives = 121/153 (79.08%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            +GDVFG+DQP+EL LL+I+P +  L GVVME+ DC+ PLVRN+V T DPMVAF+ ADV +L G+  RR GMER+DL+  NV IFKAQGQA+D VA K +KVVVVG+P+NTNA + + +APSIPK+N +ALTRLDQNRA  Q+A + G+  N V
Sbjct:   25 KGDVFGKDQPVELMLLDIEPMMTVLGGVVMEVMDCSLPLVRNVVPTADPMVAFKDADVAMLVGAMPRREGMERKDLLKANVKIFKAQGQAMDDVAKKTIKVVVVGNPANTNAFICAKYAPSIPKENFSALTRLDQNRAQAQVANKLGIPCNDV 177          
BLAST of Ggra6335.t1 vs. uniprot
Match: W5VJE1 (Malate dehydrogenase (Fragment) n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=W5VJE1_BIOGL)

HSP 1 Score: 192 bits (488), Expect = 2.460e-54
Identity = 93/153 (60.78%), Postives = 117/153 (76.47%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            +GDVFG DQ +EL LL+I P ++ L+GVVMEL DCA PLV+ I  TDDP VAF+  +   + G+  R+ GMER+DL+  NV IFKAQGQA+D+VA K V+VVVVG+P+NTNA +LS +APSIPK+N T LTRLDQNRA  QIA R GV  ++V
Sbjct:   28 KGDVFGYDQSLELNLLDITPMMEVLNGVVMELQDCAIPLVKKITATDDPNVAFKDVNAAFMVGAMPRKDGMERKDLLKANVKIFKAQGQAMDKVAKKTVRVVVVGNPANTNACILSRYAPSIPKENFTCLTRLDQNRAQAQIAARLGVTTDKV 180          
BLAST of Ggra6335.t1 vs. uniprot
Match: D3PFL2 (Malate dehydrogenase n=3 Tax=Caligidae TaxID=72034 RepID=D3PFL2_LEPSM)

HSP 1 Score: 196 bits (498), Expect = 3.190e-54
Identity = 93/152 (61.18%), Postives = 120/152 (78.95%), Query Frame = 0
Query:  125 GDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            G VFG DQP+ L+LL+I PA+  L+GVVMELHDCA PL+ +I+ +DDP+VAF+  D   L G+  RR GMER+DL+A NV IFKAQG ALD+VA K VKV+VVG+P+NTNAL+ SH+APSIPK+N +A+TRLDQNRA  Q+A++ GV    +
Sbjct:   28 GYVFGYDQPLILQLLDIAPAMGVLNGVVMELHDCALPLLSDIIASDDPLVAFKDVDAAFLVGAMPRREGMERKDLLAANVKIFKAQGGALDQVAKKTVKVIVVGNPANTNALICSHYAPSIPKENFSAMTRLDQNRASAQLAIKAGVKIGDI 179          
BLAST of Ggra6335.t1 vs. uniprot
Match: malate dehydrogenase, cytoplasmic n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DDEE (malate dehydrogenase, cytoplasmic n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DDEE)

HSP 1 Score: 193 bits (491), Expect = 3.400e-53
Identity = 91/154 (59.09%), Postives = 122/154 (79.22%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQVA 277
            +GDVFG+DQP+EL LL+I P ++ L+GVVMEL DCA PLV+N+V TDDP VAF+  D   + G+  R+ GMER+DL+  NV IFKAQGQA++++A K+VKVVVVG+P+NTNA +LS +APSIPK+N + +TRLDQNRA  QIA +  V+  +V+
Sbjct:   26 KGDVFGKDQPLELLLLDITPMMEVLNGVVMELMDCAIPLVKNLVATDDPNVAFKDVDAAFMVGAMPRKEGMERKDLLKANVKIFKAQGQAMEKLAKKSVKVVVVGNPANTNACILSKYAPSIPKENFSCMTRLDQNRAQAQIAAKLNVSTEKVS 179          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A2C9JIY8 (Malate dehydrogenase n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JIY8_BIOGL)

HSP 1 Score: 192 bits (488), Expect = 9.240e-53
Identity = 93/153 (60.78%), Postives = 117/153 (76.47%), Query Frame = 0
Query:  124 RGDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            +GDVFG DQ +EL LL+I P ++ L+GVVMEL DCA PLV+ I  TDDP VAF+  +   + G+  R+ GMER+DL+  NV IFKAQGQA+D+VA K V+VVVVG+P+NTNA +LS +APSIPK+N T LTRLDQNRA  QIA R GV  ++V
Sbjct:   26 KGDVFGYDQSLELNLLDITPMMEVLNGVVMELQDCAIPLVKKITATDDPNVAFKDVNAAFMVGAMPRKDGMERKDLLKANVKIFKAQGQAMDKVAKKTVRVVVVGNPANTNACILSRYAPSIPKENFTCLTRLDQNRAQAQIAARLGVTTDKV 178          
BLAST of Ggra6335.t1 vs. uniprot
Match: A0A097IUM9 (Malate dehydrogenase n=2 Tax=Solieriaceae TaxID=31441 RepID=A0A097IUM9_9FLOR)

HSP 1 Score: 191 bits (486), Expect = 1.750e-52
Identity = 97/152 (63.82%), Postives = 121/152 (79.61%), Query Frame = 0
Query:  125 GDVFGRDQPIELRLLEIKPALDALHGVVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLIAKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNITALTRLDQNRAFGQIAMRTGVNANQV 276
            G VFG DQP+ L LLEI PAL AL GVVME+ D A+PLV+++++T DP VAF+ A V IL G+F RR GMER+DL+AKN+ IFKAQGQAL++VA+++VKVVVVG+P+NTNA+VLSHFAP I   NITALTRLD NRA  Q+A R   + + V
Sbjct:   32 GHVFGPDQPLNLHLLEIPPALPALSGVVMEVIDGAYPLVKSVMQTSDPNVAFRAAHVAILVGAFPRRAGMERKDLLAKNLPIFKAQGQALNQVANRDVKVVVVGNPANTNAMVLSHFAPDIAPANITALTRLDHNRALAQVAKRMDTSVSDV 183          
The following BLAST results are available for this feature:
BLAST of Ggra6335.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUQ29.160e-9095.42Malate dehydrogenase n=2 Tax=Rhodymeniophycidae Ta... [more]
A0A097IUR93.110e-8086.93Malate dehydrogenase n=2 Tax=Gracilariaceae TaxID=... [more]
A0A097IUP84.790e-7478.95Malate dehydrogenase n=2 Tax=Gracilariopsis TaxID=... [more]
A0A433TZL72.940e-5663.40Malate dehydrogenase n=1 Tax=Elysia chlorotica Tax... [more]
A0A3Q9JLD14.410e-5562.09Malate dehydrogenase n=1 Tax=Adamussium colbecki T... [more]
W5VJE12.460e-5460.78Malate dehydrogenase (Fragment) n=1 Tax=Biomphalar... [more]
D3PFL23.190e-5461.18Malate dehydrogenase n=3 Tax=Caligidae TaxID=72034... [more]
malate dehydrogenase, cytoplasmic n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DDEE3.400e-5359.09malate dehydrogenase, cytoplasmic n=1 Tax=Aplysia ... [more]
A0A2C9JIY89.240e-5360.78Malate dehydrogenase n=1 Tax=Biomphalaria glabrata... [more]
A0A097IUM91.750e-5263.82Malate dehydrogenase n=2 Tax=Solieriaceae TaxID=31... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 393..427
NoneNo IPR availableGENE3D3.30.70.2970Protein of unknown function (DUF541), domain 2coord: 397..488
e-value: 4.4E-30
score: 106.9
NoneNo IPR availableGENE3D3.40.50.720coord: 123..252
e-value: 5.8E-45
score: 154.9
NoneNo IPR availableGENE3D3.30.110.170Protein of unknown function (DUF541), domain 1coord: 489..562
e-value: 4.4E-30
score: 106.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..123
IPR001236Lactate/malate dehydrogenase, N-terminalPFAMPF00056Ldh_1_Ncoord: 135..250
e-value: 1.5E-24
score: 86.7
IPR007497Protein of unknown function DUF541PFAMPF04402SIMPLcoord: 398..563
e-value: 5.2E-21
score: 75.9
IPR010945Malate dehydrogenase, type 2PANTHERPTHR23382MALATE DEHYDROGENASEcoord: 123..276
IPR001252Malate dehydrogenase, active sitePROSITEPS00068MDHcoord: 253..265
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 125..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:216268..239881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6335.t1Ggra6335.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 216268..239881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6335.t1 ID=Ggra6335.t1|Name=Ggra6335.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=571bp
MPTNRVFDEYRHCCYAIASPHRRAASRAHFTSPPAPTQPLPHGTGTWLTG
ARYAPHPENEPPPPPAVLSAGAKPALHDAPSPPPMSHRPEPVSTAVNVPT
VLDARPDALAPPPPPPPPENPHPRGDVFGRDQPIELRLLEIKPALDALHG
VVMELHDCAFPLVRNIVETDDPMVAFQHADVTILGGSFHRRPGMERRDLI
AKNVNIFKAQGQALDRVASKNVKVVVVGDPSNTNALVLSHFAPSIPKQNI
TALTRLDQNRAFGQIAMRTGVNANQVAVHQRMADFRKKRCMPNLACTPIP
GKVRLQRHDVTVTSAPWLTSSNVPVSDLMMPEVLLNANENNANEGMIPPV
LLELNDENEEIVGVETNISAEPTPQVTTSNDQEDWVQLIKTGLQKGEDVF
NAMKEKIKELEIKVGQLESKNERLAKQISLFMEAEDAFHKAKNYKTDSAS
LSNQVRVVVRDLDSLGRIVDVLVSAGSNRISGVTFSIGNDTELRNRARAL
AVADATSRAGVYAEAAEVKVGELIAISEQSIPQPQLRQSFGAFAAEASVP
IATGELDVQATVFLHLALVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001236Lactate/malate_DH_N
IPR007497DUF541
IPR010945Malate_DH_type2
IPR001252Malate_DH_AS
IPR036291NAD(P)-bd_dom_sf