Ggra6317.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6317.t1
Unique NameGgra6317.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Homology
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BLAST of Ggra6317.t1 vs. uniprot
Match: A0A2V3IHW5 (CSC1-like protein ERD4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHW5_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 5.690e-10
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:   61 HYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDAAFFIRFLATQTKFW 114
            +Y+ TPL +LP PS  PL+W++ TL + E D +RTH LD AFFIRFLATQ K +
Sbjct:   61 NYDQTPLQVLPSPSPRPLSWLRSTLNYSEQDTIRTHGLDVAFFIRFLATQAKIF 114
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BLAST of Ggra6317.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 3.640e-7
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:  148 INLKAQYVDLIVTMLSGVAELCLFGSTFAFNSYAECDALKRRKQVRVR 195
            I LK+Q+V LIVT++SG+AEL LFG+   FN Y+EC AL++ +QV VR
Sbjct:    4 IPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVR 51
[Close]
BLAST of Ggra6317.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-6
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0 
Query:  145 MFLINLKAQYVDLIVTMLSGVAELCLFGSTFAFNSYAECDALKRRKQVRVRH 196
            M LI LK+QY  LIVT++SG+AEL L  +   FN Y EC AL+   +V VRH
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRH 52
The following BLAST results are available for this feature:
BLAST of Ggra6317.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHW55.690e-1057.41CSC1-like protein ERD4 n=1 Tax=Gracilariopsis chor... [more]
A0A2V3IT053.640e-758.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C21.580e-653.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..142
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..117
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 143..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..181
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 182..206
NoneNo IPR availableTMHMMTMhelixcoord: 120..142
NoneNo IPR availableTMHMMTMhelixcoord: 157..179
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:85406..86572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6317.t1Ggra6317.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 85406..86572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6317.t1 ID=Ggra6317.t1|Name=Ggra6317.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MFAFVTPVVACTTAVIIVPNCRYVHAKPACSVKWRPAKQANVPSTPPHNA
IATASRTPPWHYNHTPLVLLPKPSALPLAWVKHTLLHLESDVVRTHDLDA
AFFIRFLATQTKFWRTRLLWLLSPACTSLDGQLVLVSASAYFSEMFLINL
KAQYVDLIVTMLSGVAELCLFGSTFAFNSYAECDALKRRKQVRVRHKKWF
CLQPHN*
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