Ggra6259.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6259.t1
Unique NameGgra6259.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length276
Homology
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BLAST of Ggra6259.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441758C (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441758C)

HSP 1 Score: 58.5 bits (140), Expect = 5.110e-6
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 0 
Query:   17 VRSVAFSADGRRVVTGCDDGSVCMWDVQSRRRVPPNYHPIEPNPGSLRRLAFSSDGRLLTCRIRWNDEVALFRTDALREAHEKEPGFEGSMDMVKPP 113
            VRSVAFS DG+RVV+G DD  VC+WDV S + V   + P++ +   +  +AFS D     C IR+         DA  E  E + G E    ++  P
Sbjct:  987 VRSVAFSTDGKRVVSGSDDQKVCIWDVPSEQLV---HLPLQRHTDKVTSVAFSPDSNW-DCTIRF--------WDASTECSESDEGLEDDRAVLPQP 1071
The following BLAST results are available for this feature:
BLAST of Ggra6259.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441758C5.110e-638.14hypothetical protein n=1 Tax=Punctularia strigosoz... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 3..42
e-value: 3.3E-5
score: 33.3
coord: 120..157
e-value: 87.0
score: 4.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 15..42
e-value: 1.4E-5
score: 25.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 17..51
score: 12.01227
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 6..227
e-value: 4.1E-21
score: 77.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 29..43
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 15..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:352781..353746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6259.t1Ggra6259.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 352781..353746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6259.t1 ID=Ggra6259.t1|Name=Ggra6259.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=276bp
MKRGVQVGEPFVGCGYVRSVAFSADGRRVVTGCDDGSVCMWDVQSRRRVP
PNYHPIEPNPGSLRRLAFSSDGRLLTCRIRWNDEVALFRTDALREAHEKE
PGFEGSMDMVKPPTRCRWQFRRVRKCLLNHEKVLAAAFGLNDTRLATANA
VCVCVWDIGSELKDVSWRMGQSLAKVNHSLGNSLRALWMSADGVHVAALG
ANDDVILIDMQRQQHADLSVWHTVVPQIKWPCAQPLARRLEVGGLMAVAD
EDVLRVRDHFITVRRGYLGFCAMES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf