Ggra6254.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6254.t1
Unique NameGgra6254.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Homology
BLAST of Ggra6254.t1 vs. uniprot
Match: A0A2V3J0V9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0V9_9FLOR)

HSP 1 Score: 278 bits (712), Expect = 5.620e-85
Identity = 175/481 (36.38%), Postives = 260/481 (54.05%), Query Frame = 0
Query:    7 GIDVTPTSTLSTIQFENEVLNTIVTSLLTTLVIANLGSIINRLVVLSRHDVFSYHAFARSYVFLNSDDPLRLWYWFRGCYDF----RPANQSPTRY-----RIFRRHLIAPLFARLCILAVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPVEFL-EVCAEIPLDTRLGTVRSSASYCSYSVTPGDIPMLAGLASVNEGLQGSFVVVSYSNSSGLLLSLIFSGDTIQSIGSFVRWKTD-NGDKYNSLFPFWNGERHLKVVSDALGFATNQDCNVIASSSSSVESGDIFSGAVGC--AFDANDAIRFVFAAMRESLSFRKEEGVALRARLQTDSTFDV--DRVCAVNVTVTRPLINIVPLVIGLLTAFVLNMAIRFIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTSDDVETVALRKYVCADGVSGHVGFVEGLGDFPVEEFYDGRNVGRCLQVACRGPRFVSELSRKGG 472
            G+D TP  T+STIQFENEV+NT+ TSL+   ++ NLGSIINRLV +S    F+Y +F R+++F++SDD  RL YW++G   +     P      R      R+ RR L+ P+ AR+ ++  SI SIAL +P +K    C   DY      +       P   L  +C +IP++T+ G V S  SYCS +V P D   L          + + V+  Y    GLL+S          + SFV W+   NG+ Y S    W+ ERHL V ++ +    N+ C + ++ + S++   +  G + C  A D       V  A+R+SL + K      R++L T   F +   R C V ++V RP++NIVPL++ L+  + LN A+   VS  G+ MD+ F +V+E LGHD  +NPL+ S    +V+ + L+++ CADG S H+GF+ G GD  VEEF DG+ V +C Q   +GPR      R  G
Sbjct:    6 GVDYTPLLTISTIQFENEVVNTVATSLIVVFLLTNLGSIINRLVFISDKTQFNYRSFLRAFIFMHSDDITRLAYWWKGKNPYLSLLNPGGSGGGRAQRMLNRVQRRRLLLPVCARILLVVSSIASIALTIPGKKTFSSCGRADYEPQMGSVSPNFSEEPGGVLTRLCRDIPINTKRGDVSSKVSYCS-TVLPLDTNALFE--------ESTAVIAGYWEQGGLLISGYTVNGRSNLVLSFVEWQRGVNGNIYRSHIRQWSPERHLGVCAEGISRDRNRACTIQSTRNDSIQGVGVTLGLLSCDDAPDLQSGSSLVAGAVRDSLGWVKFRSTIQRSKL-TGGEFRIPQQRECPVVISVERPVVNIVPLLVALVMMYTLNYAVNETVSHKGDIMDALFLLVKETLGHDCTSNPLEDSGGEKEVDVLQLQRFECADGRSAHIGFLRGRGDRVVEEFSDGKLVHQCYQTRAQGPRVPEVAERVEG 476          
BLAST of Ggra6254.t1 vs. uniprot
Match: R7QQN3 (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QQN3_CHOCR)

HSP 1 Score: 244 bits (622), Expect = 5.860e-71
Identity = 162/462 (35.06%), Postives = 254/462 (54.98%), Query Frame = 0
Query:    8 IDVTPTSTLSTIQFENEVLNTIVTSLLTTLVIANLGSIINRLVVLSRHDVFSYHAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILAVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPVEFLEVCAEIPLDTRLGTVRSSASYCSYSVTPG-DIPMLAGLASVNEGLQGSFVVVSYSNSSGLLLSLIFSGDTIQSIGSFVRWKTDNGDKYNSL-FPFWNGER-----HLKVVSDALGFATNQDCNVIASSSS-SVESGDIFSGA--VGCAFDANDAIRFVFAAMRESLSFRKEEGVALRARLQTDSTFDVDR---VCAVNVTVTRPLINIVPLVIGLLTAFVLNMAIRFIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTSDDVETVALRKYVCADGVSGHVGFVEGLGDFPVEEFYDGRNVGRCLQV 456
            ++ TP  + ST+Q  ++++N ++ SLLT  VI+N+ S+ ++L+  SR   F Y ++ RS++F+NSDDP+R++ W    Y ++    +  R  I  R L+ PL ARL IL  +I S+A+++PSEKRL GC  GD+ +   P  R+P  +P +   VCA+IPL T LG VRS  SYCS  V  G ++P       V+EG  G   +V+ +  SG L + + S +   +   +++W  +   + N     F N E+     HL+V+++AL   T Q C    +S     E   + + A  + C FD    I  V A +  SL+  K     +  RL+ +   D  R    C ++V V+RP++NI+PL + L+   ++N+ +    SR GNA D  FHI++E LGHDT +NPL+ ++   +   + LRK+ C  G + H GF+   GD PV+ F    NV  C QV
Sbjct:    7 LNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP--AP-DLNRVCADIPLTTTLGEVRSRVSYCSCLVDFGSNVP-------VSEGEGG---IVTITTESGQLWTALVSKNKTAASAFYIQWVKNRRQRDNDKSLLFTNVEKIDSDDHLQVIANALRSETVQQCTAKGTSDKLPSEDNSLIAKAQILDCDFDPLSLIARVQAYVTGSLTLNKLRRGEMDNRLELNPLTDEVRETAACPIDVVVSRPIVNILPLALMLVLWGIINVLVSIYTSRRGNAFDMGFHIIKEALGHDTTSNPLEENSNRGEAMELPLRKWRCGAGAA-HEGFIGRDGDVPVQGFDSFTNVCGCTQV 454          
BLAST of Ggra6254.t1 vs. uniprot
Match: A0A2V3II47 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II47_9FLOR)

HSP 1 Score: 216 bits (549), Expect = 1.120e-61
Identity = 151/462 (32.68%), Postives = 225/462 (48.70%), Query Frame = 0
Query:    4 ITDGIDVTPTSTLSTIQFENEVLNTIVTSLLTTLVIANLGSIINRLVVLSRHDVFSYHAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILAVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPVEFLEVCAEIPLDTRLGTVRSSASYCSYSVTPGDIPMLAGLASVNEGLQGSFVVVSYSNSSGLLLSLIFSGDTIQSIGSFVRWKTDNGDKYNSLFPFWNGERHLKVVSDALGFATNQDCNVIASSSSSVESGDIFSGAVGCAFDANDAIRFVFAAMRESLSFRKEEGVALRARLQTDSTFDVD-RVCAVNVTVTRPLINIVPLVIGLLTAFVLNMAIRFIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTSDDVETVALRKYVCADGVSGHVGFVEGLGDFPVEEFYDGRNVGRCLQVACRGPRFV 464
            I +G+   P  TLSTIQF ++ LN+IV +L+TT++IAN  SI+N+LV +S+ DVFS++++ R++VF NSDDP   +   RG Y F   N S T+ ++ ++ LI PLFAR                           D+  V         VS  E L V                                 GL    + L+            G L S++ S   +  +G  V+W   NGD ++S    +    HL V++DA+   T   C +      S  +  +F  ++ CAF        +  AM +SL F+++E VALR R   + +  +D R CA  +T+ RPL+N++ LVIG + AF +N     ++S   +     FH+VRE+LGHDT ANPLQ     +  + V +R++VC +  S HV F+EG GD  V+   D R+V  C Q+AC G R V
Sbjct:   24 IEEGLKFNPNLTLSTIQFSSDNLNSIVAALITTIIIANPQSIVNKLVAVSKQDVFSFNSYRRAFVFANSDDPSLGFSCLRGRYGFGFGNGSHTQLKLRKKLLIVPLFARY-------------------------SDFAKV---------VSKTEELRV--------------------------------PGLLMAGQDLK-----------IGALFSVLVSCKKVVVLGFGVKWAMPNGDVFHSKVSNYESYVHLGVLADAVRQPTKSTCEIRRVEPISDSANGVFMASLDCAFPPEKEFSTLLVAMTKSLHFQEQEEVALRHRRFANGSSVMDSRTCAAEITINRPLMNLILLVIGAVAAFAVNKTTAALLSCRADVTHLGFHMVRELLGHDTRANPLQHGKEQEQDQRVTIRRFVCINEESAHVCFMEGDGDRVVQHLEDSRHVACCSQIACVGRRLV 408          
BLAST of Ggra6254.t1 vs. uniprot
Match: R7QI75 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI75_CHOCR)

HSP 1 Score: 157 bits (396), Expect = 8.800e-41
Identity = 99/275 (36.00%), Postives = 158/275 (57.45%), Query Frame = 0
Query:    8 IDVTPTSTLSTIQFENEVLNTIVTSLLTTLVIANLGSIINRLVVLSRHDVFSYHAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRIFRRHLIAPLFARLCILAVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRRRPDVSPVEFLEVCAEIPLDTRLGTVRSSASYCSYSVTPG-DIPMLAGLASVNEGLQGSFVVVSYSNSSGLLLSLIFSGDTIQSIGSFVRWKTDNGDKYNSL-FPFWNGER-----HLKVVSDALGFATNQDC 275
            ++ TP  + ST+Q  ++++N ++ SLLT  VI+N+ S+ ++L+  SR   F Y ++ RS++F+NSDDP+R++ W    Y ++    +  R  I  R L+ PL ARL IL  +I S+A+++PSEKRL GC  GD+ +   P  R+P  +P +   VCA+IPL T LG VRS  SYCS  V  G ++P       V+EG  G   +V+ +  SG L + + S +   +   +++W  +   + N     F N E+     HL+V+++AL   T Q C
Sbjct:    7 LNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP--AP-DLNRVCADIPLTTTLGEVRSRVSYCSCLVDFGSNVP-------VSEGEGG---IVTITTESGQLWTALVSKNNTAASAFYIQWVKNRRQRDNDKSLLFTNVEKIDSDDHLQVIANALRSETVQQC 268          
BLAST of Ggra6254.t1 vs. uniprot
Match: A0A2V3II31 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II31_9FLOR)

HSP 1 Score: 154 bits (389), Expect = 1.030e-39
Identity = 86/248 (34.68%), Postives = 135/248 (54.44%), Query Frame = 0
Query:  218 GLLLSLIFSGDTIQSIGSFVRWKTDNGDKYNSLFPFWNGERHLKVVSDALGFATNQDCNVIASSSSSVESGDIFSGAVGCAFDANDAIRFVFAAMRESLSFRKEEGVALRARLQTDSTFDVD-RVCAVNVTVTRPLINIVPLVIGLLTAFVLNMAIRFIVSRHGNAMDSAFHIVREVLGHDTGANPLQVSTTSDDVETVALRKYVCADGVSGHVGFVEGLGDFPVEEFYDGRNVGRCLQVACRGPRFV 464
            G L S++ S   +  +G  V+W   NGD ++S    +    HL V++DA+    N  C +      S  +  +   ++ CAF     +  V  A+ +SL  +++E VALR R   + +  +D R  A  +T+ RPL+N++ LVIG + AF +N     ++S   +     FH+VRE+LGHDT ANPLQ     +  + V ++++VC +G S HVGF+EG GD  V+   + R+V  C Q+AC G R V
Sbjct:   38 GALFSVLVSSKKVVVLGFGVKWAMPNGDVFHSKVSNYESYVHLGVLADAVRQPNNSTCEIRRVEPISDSANGVVMASLDCAFPPEKVLNTVLVAVTKSLHLQEQEEVALRHRTFANGSSVMDSRTWAAEITIKRPLMNLILLVIGAVAAFAVNKTTAALLSSRADVTHLGFHMVRELLGHDTRANPLQHGKEQEQDQRVTMQRFVCINGESAHVGFMEGDGDRVVQHLENIRHVACCSQIACEGRRLV 285          
The following BLAST results are available for this feature:
BLAST of Ggra6254.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J0V95.620e-8536.38Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QQN35.860e-7135.06Uncharacterized protein n=3 Tax=Chondrus crispus T... [more]
A0A2V3II471.120e-6132.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QI758.800e-4136.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3II311.030e-3934.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 377..473
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..354
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 355..376
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 355..377
NoneNo IPR availableTMHMMTMhelixcoord: 105..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:261364..262785 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6254.t1Ggra6254.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 261364..262785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6254.t1 ID=Ggra6254.t1|Name=Ggra6254.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MAQITDGIDVTPTSTLSTIQFENEVLNTIVTSLLTTLVIANLGSIINRLV
VLSRHDVFSYHAFARSYVFLNSDDPLRLWYWFRGCYDFRPANQSPTRYRI
FRRHLIAPLFARLCILAVSIGSIALALPSEKRLDGCSGGDYTVVQSPLRR
RPDVSPVEFLEVCAEIPLDTRLGTVRSSASYCSYSVTPGDIPMLAGLASV
NEGLQGSFVVVSYSNSSGLLLSLIFSGDTIQSIGSFVRWKTDNGDKYNSL
FPFWNGERHLKVVSDALGFATNQDCNVIASSSSSVESGDIFSGAVGCAFD
ANDAIRFVFAAMRESLSFRKEEGVALRARLQTDSTFDVDRVCAVNVTVTR
PLINIVPLVIGLLTAFVLNMAIRFIVSRHGNAMDSAFHIVREVLGHDTGA
NPLQVSTTSDDVETVALRKYVCADGVSGHVGFVEGLGDFPVEEFYDGRNV
GRCLQVACRGPRFVSELSRKGGE*
back to top