Ggra6243.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6243.t1
Unique NameGgra6243.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Homology
BLAST of Ggra6243.t1 vs. uniprot
Match: A0A2V3J1U1 (Small GTPase-like protein LIP2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1U1_9FLOR)

HSP 1 Score: 448 bits (1152), Expect = 5.040e-157
Identity = 218/274 (79.56%), Postives = 243/274 (88.69%), Query Frame = 0
Query:   32 MEEAHAIRVLVVGDDNVGKSTLVQALCGASHRSKPPLACRISVRFVEDHIQEFYDLPGSPHFQHGRKLFFAHIRYDAGLFVYDTSDPATRSSVSCVWVPEVMEHLGDAGAVESGGRLDGSDVHVRSRGVLNELRFLWRQAFFSHGAVSPWQAEGEALRLLMRLIRLLLNESGIWSDTSIDREAERMFLATSLVPVAIVGMKADLAGRDDTQQDQIEGLPHSVPHLRLHANNAAHDARLSAFLKKVAASSKRKPSASSQLLPARHNRGHMMIGFS 305
            ME  + IR+LVVGDDNVGKSTLV+ALCG +H +KPP+ACRISVR  EDHIQEFYD+PGSPHFQHGRKLFF+H RY+A LFVYD SDPATRSSVSCVWVPEVM HLGDAGAVESGGRLDGSD+HVRSRG LNELRFLWRQAFFSHGAVSP QA  EALRLLMRL RL+LNE+G+W+++SIDREAERMFLATS VPVAIVGMKADL  RDD Q+D +   P +VPHLRLHANNAAHD +L+AFLKKVA S+KRKP +SSQ L +RH+ GHMMIGFS
Sbjct:    1 MEPTNTIRILVVGDDNVGKSTLVRALCGLTHDAKPPMACRISVRAFEDHIQEFYDIPGSPHFQHGRKLFFSHTRYNAVLFVYDVSDPATRSSVSCVWVPEVMVHLGDAGAVESGGRLDGSDIHVRSRGALNELRFLWRQAFFSHGAVSPIQAGREALRLLMRLFRLILNETGVWTNSSIDREAERMFLATSTVPVAIVGMKADLVDRDDLQRDFLHDHPQAVPHLRLHANNAAHDVKLAAFLKKVADSAKRKPPSSSQRLSSRHSHGHMMIGFS 274          
BLAST of Ggra6243.t1 vs. uniprot
Match: R7QIR8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIR8_CHOCR)

HSP 1 Score: 327 bits (838), Expect = 3.030e-109
Identity = 160/278 (57.55%), Postives = 210/278 (75.54%), Query Frame = 0
Query:   32 MEEAHAIRVLVVGDDNVGKSTLVQALCGASHRS--KPPLACRISVRFVED--HIQEFYDLPGSPHFQHGRKLFFAHIRYDAGLFVYDTSDPATRSSVSCVWVPEVMEHLGDAGAVESGGRLDGSDVHVRSRGVLNELRFLWRQAFFSHGAVSPWQAEGEALRLLMRLIRLLLNESGIWSDTSIDREAERMFLATSLVPVAIVGMKADLAGRDDTQQDQIEGLPHSVPHLRLHANNAAHDARLSAFLKKVAASSKRKPSASSQLLPARHNRGHMMIGFS 305
            ME+A  +R+LVVGDDNVGK+TLVQALCGAS  S  K    C +SVR   D  H++EFYD+ G+P ++HGR++FF+H RYD  +FVYD +D +TRSS+SC WVPEVM HLGD GA+E+GGR DG + HVRS GV+NELRFLWRQ FF+H  VS  QA  E +RL  RL+RL +NE G+W D+S+D EAER++LATSLVP AIVGMK+DL  R +T+  +I+  P  VP +RL+AN+ AHDA+LSAFL++VA S+KRK  A++ +  +R      ++GF+
Sbjct:    1 MEQAITVRLLVVGDDNVGKTTLVQALCGASSHSIGKTTAGCAVSVRLANDSKHVEEFYDVAGAPRYRHGRQVFFSHKRYDGVIFVYDVTDRSTRSSISCTWVPEVMTHLGDVGAIEAGGRGDGEEAHVRSAGVINELRFLWRQVFFTHSRVSSAQAIKEGVRLSWRLMRLWMNEMGLWPDSSLDEEAERVYLATSLVPCAIVGMKSDLVDRPETRDGEIQNRPKGVPDVRLYANSVAHDAKLSAFLRRVAESAKRK--AATPIKSSRRTASGQLLGFA 276          
BLAST of Ggra6243.t1 vs. uniprot
Match: A0A7S0LWJ2 (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWJ2_9CRYP)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-8
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   35 AHAIRVLVVGDDNVGKSTLVQALCGASHRSKP--PLACRISVRFVEDH-------IQEFYDLPGSPHFQHGRKLFFAHIRYDAGLFVYDTSDPATRSSV 124
            A  IRVL++GD  VGKS+L   +C      +P   + C I V++ E           EF+D+ GSP FQ  R +F++++ YD  +FV+  ++  +R ++
Sbjct:    8 AEKIRVLILGDSGVGKSSLAHLICTGEELKRPRSTVGCTIHVKYHESRACPGKSSFVEFWDVGGSPKFQESRHIFYSNV-YDGIIFVHSVANSVSRKNL 105          
The following BLAST results are available for this feature:
BLAST of Ggra6243.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J1U15.040e-15779.56Small GTPase-like protein LIP2 n=1 Tax=Gracilariop... [more]
R7QIR83.030e-10957.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0LWJ21.670e-833.33Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 38..59
score: 33.98
coord: 222..235
score: 40.86
NoneNo IPR availableCDDcd00882Ras_like_GTPasecoord: 41..120
e-value: 2.70303E-8
score: 50.5328
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 39..117
e-value: 1.0E-7
score: 32.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 26..283
e-value: 5.4E-14
score: 53.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 38..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:132746..133843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6243.t1Ggra6243.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 132746..133843 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6243.t1 ID=Ggra6243.t1|Name=Ggra6243.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MKLEPENDVCLAGKHSAIHRFLVGVRASCRLMEEAHAIRVLVVGDDNVGK
STLVQALCGASHRSKPPLACRISVRFVEDHIQEFYDLPGSPHFQHGRKLF
FAHIRYDAGLFVYDTSDPATRSSVSCVWVPEVMEHLGDAGAVESGGRLDG
SDVHVRSRGVLNELRFLWRQAFFSHGAVSPWQAEGEALRLLMRLIRLLLN
ESGIWSDTSIDREAERMFLATSLVPVAIVGMKADLAGRDDTQQDQIEGLP
HSVPHLRLHANNAAHDARLSAFLKKVAASSKRKPSASSQLLPARHNRGHM
MIGFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP-bd
IPR027417P-loop_NTPase