Ggra6235.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6235.t1
Unique Name	Ggra6235.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	773

Homology

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BLAST of Ggra6235.t1 vs. uniprot
Match: A0A2V3IMB6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMB6_9FLOR)

HSP 1 Score: 290 bits (743), Expect = 2.810e-85
Identity = 154/266 (57.89%), Postives = 196/266 (73.68%), Query Frame = 0

Query:  526 TVLPSPTTNPPTE------------DDIVSSNDPGAVMIP-SSPSPSASPA-----GIPPMAVPMSAESGGS-SRTEKNYGVRNGENVIQLAEMVYKLVREEGVFSLAVAPCDEVADWLPNVVRRLREELVEMQFYCIDTRTPRQDIKPLQRVFGDVATDFIQVAADDIKDSIPTELDMVLSWKGLQRWGMERGWRFLRGLRDSGTKFVLVSNNPGIVNMEATERAVNVRSSPLLFGEPRRVIGDVTQDNSVQLLLYAMDDIRDGF 772
            TV PSP  +P +E             D  S ++ GA+M P S+P PSASP+      IPPMAVPMS ES  +  R +   G+R+GENV QLA+MVYK+ RE  +FS+A APCDEV DW+P+V+R+L+ ELV +QFYCIDTR P QD+  L++VFGDVA+  +Q   ++IKD IP ELDMV+SWKGLQRWG+++GWRF+RGLRDSG K+VLVSNNP I N++    AVNVR SPLLFGEPRR+I  +T D+S +LLLYAMD++RDGF
Sbjct:  299 TVSPSPMASPKSEVNEAAPSTFVSEQDRTSEDERGAIMSPMSTPWPSASPSEASPIDIPPMAVPMSLESEKTVERGDGIDGLRDGENVTQLAQMVYKVAREANIFSMAAAPCDEVTDWMPDVIRKLQSELVGLQFYCIDTREPVQDMTTLRQVFGDVASAILQANVNEIKDIIPKELDMVVSWKGLQRWGLDKGWRFMRGLRDSGAKYVLVSNNPRISNLDENMDAVNVRRSPLLFGEPRRIISGITPDSSTELLLYAMDEVRDGF 564

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BLAST of Ggra6235.t1 vs. uniprot
Match: A0A7S0ZI99 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI99_9RHOD)

HSP 1 Score: 77.4 bits (189), Expect = 3.360e-11
Identity = 57/212 (26.89%), Postives = 102/212 (48.11%), Query Frame = 0

Query:  587 GVRNGENVIQLAEMVYKLVREEGVFSLAVAPCDEVADWLPNVVRRLREELVEMQFYCIDTRTPRQDIKPLQRVFGDVATDFIQVAADDIKDSIPTE-----------LDMVLSWKGLQRWGMERGWRFLRGLRDSGTKFVLVSNNPGIVNMEATERAV---NVRSSPLLFGEPRRVIGD---VTQDN------------SVQLLLYAMDDIR 769
            G  +G  + +L+ M+Y++V+   + S+A+ PCD V  W+P+++ RL  + VE     +    P    + + R+       F + +A +I   + TE           +D+V SW  +Q+    + W FL+ L D   K+ +V+NN  I N       +   N+R+ P    EP +VIG+   V ++N            SVQ+L+Y + ++R
Sbjct:  228 GYIDGVQIERLSFMLYRIVQNYSIRSVAIVPCDTVVQWMPSLLNRLDFD-VEGGMKSVRCVYPNGKNEEMNRI----KMKFDEESALEIGHVVVTENEQEWNHVLSGIDLVFSWNWIQKLMDGKVWSFLKMLNDCQVKYFVVNNNKSIKNTRRKTHGIGEINLRAPPYRLAEPLKVIGNLSKVLEENEEDSIQEKIKKGSVQMLVYKVCEMR 434

The following BLAST results are available for this feature:

BLAST of Ggra6235.t1 vs. uniprot

BLAST of Ggra6235.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IMB6	2.810e-85	57.89	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A7S0ZI99	3.360e-11	26.89	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..541
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 416..585
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 11..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..10
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..772
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:106465..108783 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6235.t1	Ggra6235.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000879_pilon 106465..108783 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6235.t1 ID=Ggra6235.t1|Name=Ggra6235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=773bp
MTPSSRAMCPSLLLALFVFCIAVVAHPYPSRYSTYSREHYAARRSRTHLS
FPSPLRYRQLKAQHLSTTPTTSDSRPSDANATDSHTPAHLRVSHSPLPAT
VGGGRTLPTSAFYRLKFTLSNNSSQRNATKRNATTSNHSSVNEVFPSETV
AEVNTSNKLPESSHAEQRATSFKEKADDIFSAMGLNGLKQLVSSIASAKS
TSWSHSASDDPHQAIPAEAEHAKNVTIPPNNISVKLAENVTLSDILQIIM
KESQKETDAVAAATEQQNKTLHSGDWSQVLWNNSSSVRNDTKMGNDNESK
EKTEMNGINGNATDDVSNTSYVLGDTMPHKAIDIIQKLHFLVHLVNETGS
EKVNTSRSGNIHRNLNRIKPDELLQLTKRYVMNLYKAMFLQEASVKHQRG
NSTIVLKSLAANARLSGDVEGTESDDVEDTDSGNESPGGEWGEKQETEPT
PPLSAQVPSTESGEEVQPGSSGEDQGSEANEGNPSSSSIVASPTIDRSDS
RGTSSGEGFQGSTDGEGDAGAITSTTVLPSPTTNPPTEDDIVSSNDPGAV
MIPSSPSPSASPAGIPPMAVPMSAESGGSSRTEKNYGVRNGENVIQLAEM
VYKLVREEGVFSLAVAPCDEVADWLPNVVRRLREELVEMQFYCIDTRTPR
QDIKPLQRVFGDVATDFIQVAADDIKDSIPTELDMVLSWKGLQRWGMERG
WRFLRGLRDSGTKFVLVSNNPGIVNMEATERAVNVRSSPLLFGEPRRVIG
DVTQDNSVQLLLYAMDDIRDGF*