Ggra6233.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6233.t1
Unique NameGgra6233.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Homology
[Close]
BLAST of Ggra6233.t1 vs. uniprot
Match: A0A2V3IK42 (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK42_9FLOR)

HSP 1 Score: 214 bits (546), Expect = 3.300e-65
Identity = 128/243 (52.67%), Postives = 168/243 (69.14%), Query Frame = 0 
Query:   82 WRRSIQQAWRNANTNERFAIIVASFAAVAFAGTLLNLVFHISLFLAVAAVSLVAAPLLFLVLLSFTAFSAGILITTGFGFLVFGAPVFTVALMAKMIVPLLAFVGGVSFVASRILPF--GRREPENQXXXXXXXESDPLDDF---DQQDAFERFDDTLKTRVT-GASAIDVESWGLNEVVDELDFSGLGEYRQLFIEERIDGHTLLSLSDEDIKAEFGPTMPLGDRVRLVRLVARLRRRASRL 318
            W R+ Q+ W+ A+ +ER   I  S  AV  AGT++N++FH+SL LA   VSLVAAP++FLV+LSFTAF  G+L+T G GF +   P     L+AK ++P+LA VGG SF+A+R+L F  GR+              D +D F   D++D FE+FD+ L+ RV  G+ + DV SW L+EVVDELD +GLGEYRQLFI+ERIDG TLL LS+ DIK EF  TMPLGDR+RL RLV  L+RR++RL
Sbjct:   22 WIRNTQKVWQGASPSERLLAIATSLGAVLLAGTVVNVLFHVSLMLAFGVVSLVAAPIVFLVMLSFTAFIFGVLMTAGVGFFLLNTPFLAFGLLAKTMLPVLAVVGGASFLAARLLGFKPGRK--------------DIVDSFPRIDEEDEFEQFDNALRNRVVEGSRSWDVASWSLSEVVDELDLTGLGEYRQLFIDERIDGRTLLLLSERDIKEEFSRTMPLGDRMRLTRLVEELKRRSTRL 250
The following BLAST results are available for this feature:
BLAST of Ggra6233.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IK423.300e-6552.67SAM domain-containing protein n=1 Tax=Gracilariops... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 246..314
e-value: 8.0E-5
score: 32.0
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 248..312
e-value: 1.7E-6
score: 28.4
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 249..314
score: 10.902155
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 234..317
e-value: 4.0E-13
score: 50.9
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 245..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..221
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 168..192
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..137
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 193..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableTMHMMTMhelixcoord: 99..118
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 177..196
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:100715..101674 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6233.t1Ggra6233.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 100715..101674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6233.t1 ID=Ggra6233.t1|Name=Ggra6233.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MGALHVLFLFNAASVPAVVSGVRSSSFLSPVRVATPLSFSLSHRRRICPL
PPHDAPFTQPVMRHYHRTPVTSRRASRTSSGWRRSIQQAWRNANTNERFA
IIVASFAAVAFAGTLLNLVFHISLFLAVAAVSLVAAPLLFLVLLSFTAFS
AGILITTGFGFLVFGAPVFTVALMAKMIVPLLAFVGGVSFVASRILPFGR
REPENQPENQPENESDPLDDFDQQDAFERFDDTLKTRVTGASAIDVESWG
LNEVVDELDFSGLGEYRQLFIEERIDGHTLLSLSDEDIKAEFGPTMPLGD
RVRLVRLVARLRRRASRLS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed_sf