Ggra6229.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6229.t1
Unique NameGgra6229.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Homology
BLAST of Ggra6229.t1 vs. uniprot
Match: A0A2V3IJZ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJZ4_9FLOR)

HSP 1 Score: 139 bits (349), Expect = 1.340e-34
Identity = 106/321 (33.02%), Postives = 167/321 (52.02%), Query Frame = 0
Query:   10 HPVYRKLVPAAAXXXXXXXXXXXXXXKSSRTIIPKHSPDMDNIEARM---QNERQDATGSRSSKNLNIYDRSREDWSASE----SQFTERSPSVTQHEATQSPPISKYSYPANSYGEAYNTTPEEFKTNQNIRHQPAVGMDTVSLFSHMRAEFMSENPSEQED--SKPQASDLPREREAGYESIVRPTTSDRPGKEKSQSSLLQHPSSISATDVLRWFVRVPTFIVSDIIVPVAQVSSIMWYDCKQWILRAKNQGERLYFMEDIQQTASEFNSFENSSATSWDWDELDVE-LTDEEKLLNEIQDNMRTLFGHAYHTVHRLF 320
            HP YRKL P+AA              +S+R      S ++ + +  +    N  +  TG+       ++  S++ W  S+    + F+  +P  +  EA  S     YS    SY     T  E      NIR QPAV MDT S+F HMRAEF+SE+    E   SKP A+    +++   ++    + +      +S++S   HP+ IS  D+++WF+ +P F++S+++VP+ QVSS +WYDCKQ IL  +NQ ER +F+E+I+Q+A    S    + T W+ D++D + LTDEE+ + EIQ    T +     TV  L+
Sbjct:   55 HPQYRKLAPSAAVTAVAASLLLRPRRRSARRSTRYSSREVSSDKHTLTLKDNLAEPQTGN------GLFTTSKQAWDESKQALANDFSSDAPQGSAAEAASSX-XXXYSI---SYRNRTRT--EGNGVEGNIRSQPAVPMDTSSVFEHMRAEFVSESEPAVEGVPSKP-ATFTDDQKDNTDDTGQHASNAYARDHHRSKTSPAPHPTLISTADIMKWFISIPVFLLSEVVVPIVQVSSFLWYDCKQRILGLQNQEERRFFLENIEQSAYSSYSERAQNETIWELDDIDEDRLTDEERQIMEIQRTATTAYKQVSSTVRGLW 362          
BLAST of Ggra6229.t1 vs. uniprot
Match: R7Q8H0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8H0_CHOCR)

HSP 1 Score: 68.9 bits (167), Expect = 1.960e-9
Identity = 68/271 (25.09%), Postives = 117/271 (43.17%), Query Frame = 0
Query:   74 IYDRSREDWSASESQFTERSPSVTQHEATQSPPISKYSYP---ANSYGEAYNTTPEEFKTNQNIR-------HQPAVGMDTV-SLFSHMRAEFMSENPSEQEDSKPQASDLPR--EREAGYESIVRPTTSDRPGKEKSQSSLLQH------PSSISATDVLRWFVRVPTFIVSDIIVPVAQVSSIMWYDCKQWIL----RAKNQGERLYFMEDIQQTASEFNSFENSSATSWDWDELDVELTDEEKLLNEIQDNMRTLFGHAYHTVHRLFK 321
            ++  SR +WS         S  V    A+ S P    + P   +  Y  +Y  T +  K NQ +          P +G++ + + F HMR EF++   S++   +  AS   R  + E  +E         R G      S   H      P  IS+  +++  VR P +++S++++PVA   +++W+D K W+L    R   QG+  YF+  +++          S A   D D    ELT+EE  + ++Q   + +      TV  +FK
Sbjct:  126 VFSASRREWSEP------ASTDVIDKSASTSDPAVAVNIPNTKSTVYSYSYKRTVKREKQNQGVSANQTRDDDDPGLGVEDMRAAFGHMRGEFITTPESDKAGREQFASTRTRADDWEDAWEEDSEEVDYARRGTSPDIQSGTTHETEERQPMPISSAKLIQQLVRAPMWVLSEVVLPVADTVALVWFDLKVWLLQIPERHSRQGKDRYFLPALKRR--------RSYAREADDDRPSHELTEEEMQIKQLQTMTKKVVKGMEGTVRNIFK 382          
The following BLAST results are available for this feature:
BLAST of Ggra6229.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJZ41.340e-3433.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q8H01.960e-925.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..321
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:92270..93235 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6229.t1Ggra6229.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 92270..93235 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6229.t1 ID=Ggra6229.t1|Name=Ggra6229.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MISDEREGPHPVYRKLVPAAATAAVASSLLLRRRQKSSRTIIPKHSPDMD
NIEARMQNERQDATGSRSSKNLNIYDRSREDWSASESQFTERSPSVTQHE
ATQSPPISKYSYPANSYGEAYNTTPEEFKTNQNIRHQPAVGMDTVSLFSH
MRAEFMSENPSEQEDSKPQASDLPREREAGYESIVRPTTSDRPGKEKSQS
SLLQHPSSISATDVLRWFVRVPTFIVSDIIVPVAQVSSIMWYDCKQWILR
AKNQGERLYFMEDIQQTASEFNSFENSSATSWDWDELDVELTDEEKLLNE
IQDNMRTLFGHAYHTVHRLFK*
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