Ggra6227.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6227.t1
Unique NameGgra6227.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Homology
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BLAST of Ggra6227.t1 vs. uniprot
Match: A0A7S1XF58 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF58_9RHOD)

HSP 1 Score: 154 bits (390), Expect = 1.980e-37
Identity = 127/499 (25.45%), Postives = 226/499 (45.29%), Query Frame = 0 
Query:   33 LDQFARQTLDP----TFIVPGLFMVKENDLNTSAYEPIRTMDRLLGQIEDSTDIDLFPTSTGWRFIRSELSGHVDEFVIHSSALELVYIYTNSTGLMPGSVVLLRRGNK----EIGQAAQAYTVTNHVREFPVRLIMHKSGNGTFDFPLPFQDISNSLTLGNDEFGRLTGDCSIGAPDQAVNIAGFTGAKREDCMGASGRLVDEYNCYKLNLPCPEDKICRHD------------------RNASCTFLTATRPNTNRTQSFMGILKELGSWSLDPPLGSGLPWQKAFI--RVTHNNDFDNVAVKREAQSQLDRDSNVIDLLLSRMVRSVESSLSPRPTSIDLTLVCVAVLSAFLAIDAIYIYQSLSKKIAQRRKNRTRSIWLERFM-VLFVAVVASSPAFVTAAVIVYQETRRGMLNMICSGNGWHAELIWDNADMENVWLIRRVIADAKLSTTHGIRPLYIILPVILTILDFVLELRVLSKYYCEKGHGQERASKKD 502
            LDQ  R   +       I+P LF  +      S  E +  ++  +G + DS    + P ST W++ +     H D+  + ++++EL Y+Y  STGL+P ++   RRG+        +A  A    +     PV      S    + FP    ++     +GN  +G+ T DC+       V+IA F+  +  DC+G       +  C      C +     +D                  +NA+C +   +    +   SF+ +L++   W+   P G+   +Q+  +  R   N   D+V    EA  Q    S   +  +S+    ++ SL  RP++IDLTLVC  +L+  LAID   +Y+  S  +A +      ++   RF  ++F  ++++SP  V   +++Y E   G L+ + S + ++ + I+  +  E++W +R V     + +  G RPLY+ILPVIL++ D   EL ++S  +  K +G  R   +D
Sbjct:   35 LDQRTRARFESLNGAAIILPQLFGYEAGVAGVS--EDLAQVESAIGDLTDSPSRRIAPASTAWKYFQQTFWSHPDDLRMTATSVELHYLYAPSTGLIPIALRDFRRGDSYWKTPPSEAIAAAVEPSETFLKPVLRKTQSSQGNLWSFPSHTDNLDGISVVGNASYGQTTNDCTERGVPIEVSIAQFSRFQTADCIGVVVPWKWDAQCLAAINNCTDLAFMENDSTLPRCGSMPNLAWSAYYQNATCAWPGVSLYRLSSNVSFLDLLEDSSFWA--QPNGTQEMYQEIIVNTRSKANRQQDSVT---EATEQATSSSGATEAAISQAAWDIQRSLISRPSTIDLTLVCAGLLANALAIDGSKVYRGASY-VAGKYIRSPVTLRRVRFGGIIFSTLLSASPGLVVTGILIYLEASWGSLHKVESLSTFYGQDIYQESAGEHIWWVRSVEVHLNILSGSGTRPLYVILPVILSLFDVAFELFLVSHAF-RKQYGINRIKTQD 524
The following BLAST results are available for this feature:
BLAST of Ggra6227.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1XF581.980e-3725.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 390..412
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 464..484
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 371..389
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 347..370
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 485..517
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 413..463
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..346
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 390..412
NoneNo IPR availableTMHMMTMhelixcoord: 347..369
NoneNo IPR availableTMHMMTMhelixcoord: 463..485

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:85520..87073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6227.t1Ggra6227.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 85520..87073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6227.t1 ID=Ggra6227.t1|Name=Ggra6227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MFSINICHFILFLFIAHADCNLNISSSSLLFELDQFARQTLDPTFIVPGL
FMVKENDLNTSAYEPIRTMDRLLGQIEDSTDIDLFPTSTGWRFIRSELSG
HVDEFVIHSSALELVYIYTNSTGLMPGSVVLLRRGNKEIGQAAQAYTVTN
HVREFPVRLIMHKSGNGTFDFPLPFQDISNSLTLGNDEFGRLTGDCSIGA
PDQAVNIAGFTGAKREDCMGASGRLVDEYNCYKLNLPCPEDKICRHDRNA
SCTFLTATRPNTNRTQSFMGILKELGSWSLDPPLGSGLPWQKAFIRVTHN
NDFDNVAVKREAQSQLDRDSNVIDLLLSRMVRSVESSLSPRPTSIDLTLV
CVAVLSAFLAIDAIYIYQSLSKKIAQRRKNRTRSIWLERFMVLFVAVVAS
SPAFVTAAVIVYQETRRGMLNMICSGNGWHAELIWDNADMENVWLIRRVI
ADAKLSTTHGIRPLYIILPVILTILDFVLELRVLSKYYCEKGHGQERASK
KDEDIFDERSQEMSDAT*
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