Ggra6181.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6181.t1
Unique NameGgra6181.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length486
Homology
BLAST of Ggra6181.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 568 bits (1465), Expect = 2.310e-198
Identity = 291/458 (63.54%), Postives = 347/458 (75.76%), Query Frame = 0
Query:   31 LEATSLRCWFPDLASPGAHIDAIM---NGINGIITNYLNEMQALLDWKCSSFIPYVEGNGTSFNRFIDMMGNCSENGRVKNDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISSSHRSGQKLFFLTTFDTASWVCIFAIIALFAFAKFLDKRFAPILSSEQQNARTDWELFRRVLRQNLHRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLNLAIGIFGLLMVLAYEASITASLVQETVIPAFQSVNDFKTCRIEPEDVCVPGGSAVETFWNNAIAYSDCHKARKGKSFFRGSFEETLAAVKNGTCKFGLILDSTLHDAIHGQYCGHLLSSEEPIYTAGLSMILPKNSSLTNPMSMATLSLRNEAATPSLQQYFQNIPKCPAPFGNVLKFEKLYLFFVSAFVVGAIFITLKACDAIRSSRTEEDVSKHLSDISSETSTTGTADDDVP 485
            L  T LRC       P  ++D      NGINGIIT YL EMQALLDW+CS FIPYVEG+GTSFNRFIDMM NC++NG +K+DP CRC+IGIGGWF+S DR+ RVDLLP FV+DGIRVTFH+S++ RSG KLFF+TTFD  SW+C+FAII LFA AKFLD+RFAPI S+++ NA   W      LR N +R  T++RST  RIVLQSDHDIV  +   H++ LNL IGIFGLL+VL+YEAS+TA+LVQETV+  +QSV D KTCRI+PEDVCVPGGSAV TFWN+AIAY DCH+  KGK++FRGSFEETL AVKNGTCKFGL+LDST+ +AIHG+YCG LLSS EPIYT GLSMILPKNS+LT  M +ATL LRNEA+ PSLQQYFQ + KC    G+VL FEKL L FV A V     I++K    +   R      K LSDIS+  S++ + + D P
Sbjct:   30 LSGTELRCCVIH-EPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANSWGRCLHFLRTNWNRLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFAIVACLGCISIKMWQRVW--RRPNSPKKELSDISAADSSSMSTEYDAP 484          
BLAST of Ggra6181.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 413 bits (1061), Expect = 5.460e-137
Identity = 219/442 (49.55%), Postives = 286/442 (64.71%), Query Frame = 0
Query:   16 IYGTVGTNQNIALLHLEATSLRCWFPDLASPGAHIDA---IMNGINGIITNYLNEMQALLDWKCSSFIPYVEGNGTSFNRFIDMMGNCSENGRVKNDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISSSHRSGQKLFFLTTFDTASWVCIFAIIALFAFAKFLDKRFAPILSSE---QQNARTDWELFRRVLRQ--NLHRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLNLAIGIFGLLMVLAYEASITASLVQETVIPAFQSVNDFKTCRIEPEDVCVPGGSAVETFWNNAIAYSDCHKARKGKSFFRGSFEETLAAVKNGTCKFGLILDSTLHDAIHGQYCGHLLSSEEPIYTAGLSMILPKNSSLTNPMSMATLSLRNEAATPSLQQYFQNIPKCPAPFGNVLKFEKLYLFFVSAFVVGAIFITLK 449
            +  TVG + +++   L    LRC   D   P A ID       G++GII  YL EMQ  L+W CSS   Y  G  TSFN F+ MM +CSENG V+NDP C CDIGI GWF +  R  RVD LP FV DG  V FHIS+S  SG+++FF+TTFD  +WV IF ++ LF+  KF D++F PI S E   + N R   + F  VL +   L+RF  AL+ST +R++L  D D+V  +  N  W LN  I + GL ++L+YEAS+TASLVQETV   FQS+ DF+TCRI P +VC+PGG A+E FWN +IA   CHK R+   FF  S++E   AV N TCK+GL+L+ST + AI+ +YCG LL++E+PIY+ GL+M+LPKNS+LT+ MS ATL + NE ATP ++QYF +IPKC       L F KL LFF  A   GA  + L+
Sbjct:   18 LLSTVGHSSDMSGA-LSGLQLRCCILD-EPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRI--QRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQ--PFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLR 453          
BLAST of Ggra6181.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 355 bits (910), Expect = 2.050e-113
Identity = 179/399 (44.86%), Postives = 250/399 (62.66%), Query Frame = 0
Query:   56 GINGIITNYLNEMQALLDWKCSSFIPYVEGNGTSFNRFIDMMGNCSENGRVKNDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISSSHRSGQKLFFLTTFDTASWVCIFAIIALFA----FAKFLDK-RFAPILSSEQQNARTDWELFRRVLRQNLHRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLNLAIGIFGLLMVLAYEASITASLVQETVIPAFQSVNDFKTCRIEPEDVCVPGGSAVETFWNNAIAYS-DCHKARKGKSFFRGSFEETLAAVKNGTCKFGLILDSTLHDAIHGQYCGHLLSSEEPIYTAGLSMILPKNSSLTNPMSMATLSLRNEAATPSLQQYFQNIPKCPAPFGNVLKFEKLYLFFVSAFVVGAIFITL 448
            GI+GII NYLN+MQ  L+W CSS   Y +G+ T FN FI MM  CSENG +K+DP C+CDIGIGGWF++  R  RVD LP FV+D  +V FHIS S  SG+  FF+TTFD+  W+CIF ++ LFA    F+ F D  R+ P+  +     R    L+        +R   +++   +R++L  + +     +    W L   + I GL ++LAYEAS+TAS+VQETV   FQS  DF+TCRI+P+DVC+P G + +T+W   +A    CHK R        S+EE    V+N TC+FG++L+ST+H  IH +YCG +LS+  PIYT GL+M+LPK+S  T  MS+ATL + + A  PSL++++     C A     L F+KL LFF+ AF  G +F+T+
Sbjct:   59 GIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSAFGDHARYQPLEPTVTPIRRIAHFLYNHPF---FYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRS--PHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGFLFLTV 452          
BLAST of Ggra6181.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 304 bits (778), Expect = 4.890e-95
Identity = 162/395 (41.01%), Postives = 230/395 (58.23%), Query Frame = 0
Query:   55 NGINGIITNYLNEMQALLDWKCSSFIPYVEGNGTSFNRFIDMMGNCSENGRVK-NDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISSSHRSGQKLFFLTTFDTASWVCIFAIIALFAFAKFLDKRFAPILSSEQQNARTDWELFRRVLR-----QNLHRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLNLAIGIFGLLMVLAYEASITASLVQETVIPAFQSVNDFKTCRIEPEDVCVPGGSAVETFWNNAIAYSDCHKARKGKSFFRGSFEETLAAVKNGTCKFGLILDSTLHDAIHGQYCGHLLSSEEPIYTAGLSMILPKNSSLTNPMSMATLSLRNEAATPSLQQYFQNIPKCPAPFGNVLKFEKLYLFFVSAFVVGA 443
            NGI+G ++ Y++E+Q  L W+CSS   +   N + FN FI+ M  C+ N     +   C CDIGIGGWF +  R  +VD LP FV D  RV  H+S++  SG+  FFL TFD+ SW+ I A+  +F   K LD RFA    +E     +     RR L        L+R   A +S++TR++LQ D+++V        W LNL IGI  L +VL++EAS+TASLVQE +   ++S  DF++C+I P DVC   G A+E FWN  IA S+CH     +  +  ++EE    + +G CKF + L+S +   I  Q CG L+  EEP+YT+GLSM++PK S+LT  MS AT++L     +  L+ + +  PKC     + L F KL LFF+ AF V A
Sbjct:   17 NGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTGVSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAV---AEPYTPLSGVSRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQ--YLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCA 406          
BLAST of Ggra6181.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 120 bits (301), Expect = 2.760e-27
Identity = 66/185 (35.68%), Postives = 101/185 (54.59%), Query Frame = 0
Query:   90 FNRFIDMMGNC-SENGRVKNDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISSSHRSGQKLFFLTTFDTASWVCIFAIIALFAFAKFLDKRFAPILSSEQQNARTDWELFR---RVLRQNL-HRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLNLAIGIFGLLMVLAYEASIT 269
            FN  ++ M  C +E G ++ DP C CD+ +GGW  S  R  +VD LP F+ DGI +  H+  +  +    FFLT F  A W  +  +  +F F K LD+RF P   S      ++  L R    +L+  + +R   AL+ST++R+V  S+ D V  ++ +  W LNL I    L ++LAYE+S+T
Sbjct:   93 FNSIVEKMDRCVTEEGTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
The following BLAST results are available for this feature:
BLAST of Ggra6181.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IUK72.310e-19863.54Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
A0A2V3IME45.460e-13749.55Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD42.050e-11344.86Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMD54.890e-9541.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q0P82.760e-2735.68Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 156..312
e-value: 7.5E-8
score: 34.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..485
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 431..448
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 449..485
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 265..430
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 158..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 183..246
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 247..264
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 113..402
NoneNo IPR availableTMHMMTMhelixcoord: 160..182
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 431..448

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:908469..912048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6181.t1Ggra6181.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 908469..912048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6181.t1 ID=Ggra6181.t1|Name=Ggra6181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MARLAANHSSARATQIYGTVGTNQNIALLHLEATSLRCWFPDLASPGAHI
DAIMNGINGIITNYLNEMQALLDWKCSSFIPYVEGNGTSFNRFIDMMGNC
SENGRVKNDPQCRCDIGIGGWFSSVDRELRVDLLPAFVFDGIRVTFHISS
SHRSGQKLFFLTTFDTASWVCIFAIIALFAFAKFLDKRFAPILSSEQQNA
RTDWELFRRVLRQNLHRFETALRSTITRIVLQSDHDIVPGRDRNHSWTLN
LAIGIFGLLMVLAYEASITASLVQETVIPAFQSVNDFKTCRIEPEDVCVP
GGSAVETFWNNAIAYSDCHKARKGKSFFRGSFEETLAAVKNGTCKFGLIL
DSTLHDAIHGQYCGHLLSSEEPIYTAGLSMILPKNSSLTNPMSMATLSLR
NEAATPSLQQYFQNIPKCPAPFGNVLKFEKLYLFFVSAFVVGAIFITLKA
CDAIRSSRTEEDVSKHLSDISSETSTTGTADDDVP*
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