Ggra6130.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6130.t1
Unique NameGgra6130.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Homology
BLAST of Ggra6130.t1 vs. uniprot
Match: A0A2V3IFI7 (Trigger_N domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI7_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 1.480e-63
Identity = 97/154 (62.99%), Postives = 130/154 (84.42%), Query Frame = 0
Query:    1 MTLLSHEKLDVVLQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNADFKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKELELQTLEGDDALAELNMKELKQRFQIGEDFVFTCEIQLRSFNTDKETEELEDIVTY-AGDVPTIDITK 153
            MTLLSHEKLDVVL + DG++AKYKLELE+PGA+SK KR+ES+Q+VKKNA FKGFRKGTIPPF+M EI++FVL+D CN VIE+A KEL+L  ++G++A  +++++E+K+RF IGEDF FTCE+QL++ N +   EELED+VT    D+ T+D+TK
Sbjct:   31 MTLLSHEKLDVVLSTKDGEIAKYKLELEVPGALSKSKRRESIQSVKKNASFKGFRKGTIPPFIMKEIDSFVLNDVCNTVIEEATKELQLSAIDGEEAQPKMDLEEMKKRFNIGEDFYFTCEVQLQAANFETPFEELEDVVTIDVDDISTVDVTK 184          
BLAST of Ggra6130.t1 vs. uniprot
Match: R7QTQ2 (Trigger_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTQ2_CHOCR)

HSP 1 Score: 117 bits (293), Expect = 4.050e-30
Identity = 62/142 (43.66%), Postives = 95/142 (66.90%), Query Frame = 0
Query:    1 MTLLSHEKLDVVLQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNADFKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKELELQTLEGDDALAELNMKELKQRFQIGEDFVFTCEIQLR---SFNTDKETEELEDI 139
            M+++SHEKL V+ +S   ++A+YK+ELEIP + SK KR++SVQA++KNADFKGFRKGTIPPF+M +I                   L+L+  +GD A  +++ +E+  RF +GEDF F+ E+ LR   S +T+  T+++ D+
Sbjct:   32 MSIVSHEKLQVLFESETSELAQYKIELEIPASHSKDKRRQSVQALRKNADFKGFRKGTIPPFIMKDIXXXXXXXXXXXXXXXXXXXLKLEKTDGDAADPDIDFEEMMGRFNVGEDFRFSLEMPLRKVLSLDTESLTQDILDV 173          
BLAST of Ggra6130.t1 vs. uniprot
Match: A0A7S0ZKE3 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKE3_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 2.030e-27
Identity = 58/128 (45.31%), Postives = 85/128 (66.41%), Query Frame = 0
Query:    9 LDVVLQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNADFKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKELELQTLEGDDALAELNM--KELKQRFQIGEDFVFTCEIQLRSFNTDKETE 134
            ++ V +SGD  ++KY+    IPGA+SK   + +++  KKNADFKGFRKGTIPPF+  EI  F L D  N ++++A K  EL+ LEGD A  E ++  K++K  F+IG+ F FT +I L+   +DK+ E
Sbjct:   93 IENVFESGDESISKYRFTGNIPGAMSKESFQTTIREFKKNADFKGFRKGTIPPFMKAEIHAFTLQDCINTLMQNAMKSQELELLEGDAADPEFDIPFKQMKSNFEIGKPFEFTAQIALKKAQSDKDKE 220          
BLAST of Ggra6130.t1 vs. uniprot
Match: A0A5J4YSI7 (Trigger factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSI7_PORPP)

HSP 1 Score: 99.8 bits (247), Expect = 3.270e-23
Identity = 53/135 (39.26%), Postives = 87/135 (64.44%), Query Frame = 0
Query:    8 KLDVVLQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNADFKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKELELQTLEGDDALAELN--MKELKQRFQIGEDFVFTCEIQLRSFNT-DKETEELEDI 139
            +L+ V  +G   +AKY +++ +PG  +    K ++++ K++ADFKGFRKGTIPPF+M EIE F + +  N  ++ A +E +L  LEG+ A+ EL     EL++ F++GE F F   I L++ +  D ET+++ DI
Sbjct:   65 ELEEVFNAGGKRIAKYSIKVTVPGETNLEIYKSTLRSAKQSADFKGFRKGTIPPFMMKEIEVFAMQECLNAALDRAVEENQLMYLEGEAAMPELKPPFDELRKTFKVGEPFSFEAHISLQTRDAEDSETDDVTDI 199          
BLAST of Ggra6130.t1 vs. uniprot
Match: L1JH75 (Trigger_N domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JH75_GUITC)

HSP 1 Score: 65.5 bits (158), Expect = 3.560e-10
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 0
Query:   13 LQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNADFKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKE--LELQTLEGDDALAELNMKELKQRFQIGEDFVFTCEIQLR 125
            L+ G+G+ AKYK  + + G +SK      ++  KKNA F GFRKG+IPPF++ +++ FV+ +     + +A +E  LEL        L +  + EL + F     F +T E  L+
Sbjct:   70 LEEGEGNAAKYKFTVTVDGQMSKDSYTAIMKDFKKNAQFPGFRKGSIPPFMIPKVKQFVILECLEKSLGEAVREQALELADENNKPNLDDAQVAELTKTFNENNGFKYTIEALLK 184          
The following BLAST results are available for this feature:
BLAST of Ggra6130.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IFI71.480e-6362.99Trigger_N domain-containing protein n=1 Tax=Gracil... [more]
R7QTQ24.050e-3043.66Trigger_N domain-containing protein n=1 Tax=Chondr... [more]
A0A7S0ZKE32.030e-2745.31Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YSI73.270e-2339.26Trigger factor n=1 Tax=Porphyridium purpureum TaxI... [more]
L1JH753.560e-1033.91Trigger_N domain-containing protein n=2 Tax=Guilla... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
IPR008881Trigger factor, ribosome-binding, bacterialPFAMPF05697Trigger_Ncoord: 21..125
e-value: 5.5E-9
score: 36.4
IPR036611Trigger factor ribosome-binding domain superfamilyGENE3D3.30.70.1050coord: 17..125
e-value: 1.0E-9
score: 40.6
IPR036611Trigger factor ribosome-binding domain superfamilySUPERFAMILY102735Trigger factor ribosome-binding domaincoord: 22..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:623074..623550 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6130.t1Ggra6130.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 623074..623550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6130.t1 ID=Ggra6130.t1|Name=Ggra6130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MTLLSHEKLDVVLQSGDGDVAKYKLELEIPGAVSKVKRKESVQAVKKNAD
FKGFRKGTIPPFVMNEIETFVLHDSCNVVIEDAAKELELQTLEGDDALAE
LNMKELKQRFQIGEDFVFTCEIQLRSFNTDKETEELEDIVTYAGDVPTID
ITKAPGDQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008881Trigger_fac_ribosome-bd_bac
IPR036611Trigger_fac_ribosome-bd_sf