Ggra6120.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6120.t1
Unique NameGgra6120.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Homology
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A2V3IJ52 (Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ52_9FLOR)

HSP 1 Score: 259 bits (661), Expect = 5.050e-84
Identity = 148/243 (60.91%), Postives = 177/243 (72.84%), Query Frame = 0
Query:    1 MDVLKPALDTLDTIISNVETALKAGSDVNKDDGNGASATLQTGKGNAPNGKEKXXXXXXXXXXXXXXSR-PVETTQFLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGLACYDGKPLVVGEGKVKCEISDGAEIH 242
            M+ LKPA + LD IISN+E AL A     K D N +        G   N K+ XXXXXXXXXXX      PVET QFLQCDLRV +VT V  HPE++ L+VLQ+ Y ND  KTVCAG+R +LS+++M +RMVVTI NLKPRKLRGIASEAMVLAGS ++  G+K+TVVP++PPEG A GS+V V+ MDGER V DGK+VSGKTWDK+VPRL V+ G ACYDG  LVV    V C++ DGAEIH
Sbjct:    1 MEALKPAFNALDAIISNIEAALNASP--TKPDHNSS--------GQPHNAKQSXXXXXXXXXXXAPVPNVPVETAQFLQCDLRVAQVTSVTHHPEADGLFVLQLTYANDVNKTVCAGLRHYLSDDDMLNRMVVTICNLKPRKLRGIASEAMVLAGSIRSSEGDKQTVVPIAPPEGAAPGSVVSVRGMDGERTVEDGKFVSGKTWDKIVPRLGVTNGNACYDGNELVVDGASVTCDLPDGAEIH 233          
BLAST of Ggra6120.t1 vs. uniprot
Match: R7QM31 (tRNA-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM31_CHOCR)

HSP 1 Score: 222 bits (565), Expect = 1.760e-69
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   74 TQFLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGLACYDGKPLVVGEGKVKCEISDGAEIH 242
            +QFLQCDLRVG+VTEV  HP+SE LYVL++ Y ++E +T+CAG+R ++ EEE++DRMVVTI NLKPR LRGI SE MVLAGS K+D G KE VV L+ P    +GSIV  + +D ER V DGK+VSGKTWDK+VPRL V  G ACYD KPL    G + C++ DGAEIH
Sbjct:   64 SQFLQCDLRVGRVTEVSYHPQSELLYVLKVRYSDEELRTICAGLRNYIPEEELKDRMVVTICNLKPRPLRGILSEGMVLAGSVKSDDGVKEEVVILAAPAAAEDGSIVIAEGIDEERTVKDGKFVSGKTWDKIVPRLSVKDGTACYDSKPLRTAAGVITCQLPDGAEIH 232          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A0D6R313 (tRNA-binding domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R313_ARACU)

HSP 1 Score: 124 bits (310), Expect = 4.450e-31
Identity = 73/180 (40.56%), Postives = 104/180 (57.78%), Query Frame = 0
Query:   69 RPVETTQ-----FLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGLACYDGKPLVVGEGKVKC-EISDGAEIH 242
            RPVE+       F +  ++VG + EV  HP SEKLY+ ++     ET+ V AG+R++ S  E+Q +MV  ++NLKP KL G  SEAMVLAG     +GE    V L PP   A G  + ++    + +    K +S K W+K+V  L+V  G+A +DGKP+    G VK  E+SDG+ IH
Sbjct:   63 RPVESNSEMEEIFTKAQIQVGYIEEVYNHPASEKLYICKVQVAEGETRQVVAGLRKYFSASELQGKMVCIVANLKPAKLAGQLSEAMVLAGEASQPNGELIVKV-LEPPSDAAIGERIFIEAR--QPSSNPVKQLSSKVWEKIVSLLRVEAGIAKFDGKPIATSTGPVKVPELSDGS-IH 238          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A150H261 (tRNA-binding domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H261_GONPE)

HSP 1 Score: 123 bits (309), Expect = 8.810e-31
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 0
Query:   72 ETTQFLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGLACYDGKPLVVGEGKVK--CEISDGAEIH 242
            E   F +  ++VG++  V+  P SEKL+ L++  G  ET+ VCAG+R+FLS E +++ +V  ++NLKP KL G ASEAMVLA   +   G +  V  L PPEG A G ++ +    G  + +  K +    W K+V  L+V+ G A ++G+ LV   G VK   EI DG+EIH
Sbjct:   84 EEALFARALIKVGRILSVEELPNSEKLFKLKVDLGAGETRQVCAGLRQFLSAEALREALVCVVANLKPAKLAGEASEAMVLAAEAEV--GGQLQVRTLIPPEGAAPGDVLYLSG--GTPSASPDKVLKSDHWKKIVGGLKVAAGGAAFNGRQLVTSSGDVKLPAEIPDGSEIH 252          
BLAST of Ggra6120.t1 vs. uniprot
Match: A9S3L0 (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S3L0_PHYPA)

HSP 1 Score: 122 bits (306), Expect = 3.560e-30
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 0
Query:   81 LRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGLACYDGKPLVVGEGKVKCE-ISDGAEIH 242
            ++V  V  V+ HP SEKLYV ++  G    K V AG+++F+++EE++ + V TI NLK  KL G  SEAM+LAGS  T+ G  E V  L PP   A G  +  +   G  +    K +S K W+KVVP LQV  GLA +D K LV   G +K   + DGA IH
Sbjct:  109 MQVSLVQSVENHPNSEKLYVCKVDVGCGNIKQVVAGLKKFVTKEELEGKKVCTILNLKTAKLAGQVSEAMILAGSVATEDGS-EIVKVLEPPSEAAPGDRIFQEG--GVPSANPAKQLSSKIWEKVVPLLQVKGGLAVFDSKSLVTSSGPIKVPGLPDGAGIH 268          
BLAST of Ggra6120.t1 vs. uniprot
Match: uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF0147 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF0147)

HSP 1 Score: 120 bits (302), Expect = 1.120e-29
Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 0
Query:   71 VETTQFLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGS-IVGVQDMDGERAVTDGKYVSG-------KTWDKVVPRLQVSQGLACYDGKPL-VVGEG---KVKCEISDGAEIH 242
            + ++ F Q  + V ++  V+ HPESEKLY + +  G  + K + AG+R+F SE+++  R V+ I NLKP+KL G+ SEAMVLAGS  T SG+ ETV  L P +    G  ++  +D D E+      YVS          W+K+V  L V  G   Y  + L V G+    KVKCE+ DG+EIH
Sbjct:   78 IPSSPFHQTYIVVARIEAVEKHPESEKLYKMTLSVGQGQHKNLVAGLRKFYSEDQLLHRKVLAILNLKPKKLAGVLSEAMVLAGS--TGSGDNETVKVLEPADEAQVGDRVILEKDFDSEQQQWKSAYVSSPEDRCSPNQWEKMVKELSVLNGQPSYAKQILCVAGQQQTIKVKCELPDGSEIH 259          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A7S1MIW1 (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MIW1_NEODS)

HSP 1 Score: 119 bits (298), Expect = 1.620e-29
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 0
Query:   74 TQFLQCDLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVS-QGLACYDGKPLVVGEGKVKCEISDG 238
            T   +   RVG+V EVKPHP+S+KLYV QI  G  E +T+ +G+R+F++EEE  +++VV  +NL+PRK+RGI S  MV+   C +  G+ +  + L  PEGV  G  +     DGE      K ++ K +D+V P L+ +  G+ACY   P V  +G V   I +G
Sbjct:   55 TSMARVAFRVGRVLEVKPHPDSDKLYVEQIDLGEPEPRTIISGLRDFVTEEEFTNKLVVVAANLEPRKMRGIPSAGMVM---CASTEGKGDVKI-LDVPEGVPPGERITFPGHDGEAEPVLKKKLA-KHYDEVAPHLRTNADGVACYGDLPFVTSKGPVTSVIKNG 215          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A2D4PDJ3 (tRNA-binding domain-containing protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PDJ3_MICSU)

HSP 1 Score: 113 bits (283), Expect = 1.420e-27
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   80 DLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGL-ACYDGKPLVVGEGKVKCEISDGAEIH 242
            DLRVGKV  V+ HP+++ LYV +I  G  E +TV +G+  F+ +EE+QDR+VV + N+KP+K+RG+ S+AM+L   C   SG+   V PL PP G   G  V V+  +  +   D      K ++K+   LQ+S+ L A + GK L+  +G + C+   G  I 
Sbjct:   34 DLRVGKVLSVEKHPDADALYVEKIDLGEAEPRTVVSGLVAFVPKEELQDRLVVLVCNMKPQKMRGVESQAMLL---CAFSSGDPCQVEPLDPPAGSCPGERVFVEGFENGQP-DDELKPKKKVFEKLQADLQISEDLVAQWKGKKLITAQGNLTCKSLKGGSIR 193          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A6P8H3S1 (Tyrosine--tRNA ligase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H3S1_ACTTE)

HSP 1 Score: 118 bits (295), Expect = 8.190e-27
Identity = 64/155 (41.29%), Postives = 98/155 (63.23%), Query Frame = 0
Query:   80 DLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKT--WDKVVPRLQVS-QGLACYDGKPLVVGEGKV 231
            DLR+GK+   K HP+++ LY+ +I  G ++ +TV +G+  +L++EE+QDRMVV + NLKP  +RGI SEAM+LA S     G++  V+PLSPPEG   G  V V+  D ++     + ++ K   ++ + P L VS +G+A Y G PL    GK+
Sbjct:  431 DLRIGKIVSAKKHPDADTLYLEEIDVGEEKPRTVVSGLVAYLTQEELQDRMVVMLCNLKPVNMRGIKSEAMLLAASAT--KGDQRKVIPLSPPEGCKPGDRVTVEGYDHKKLGEPDEQLNPKKKIFETLKPDLLVSSEGVAQYKGSPLTTTMGKI 583          
BLAST of Ggra6120.t1 vs. uniprot
Match: A0A2D4M0Z3 (tRNA-binding domain-containing protein n=3 Tax=Micrurus spixii TaxID=129469 RepID=A0A2D4M0Z3_9SAUR)

HSP 1 Score: 113 bits (282), Expect = 1.200e-26
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 0
Query:   80 DLRVGKVTEVKPHPESEKLYVLQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAMVLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSGKTWDKVVPRLQVSQGL-ACYDGKPLVVGEGKVKCEISDGAEIH 242
            DLRVGKV  V+ HP+++ LYV +I  G  E +TV +G+  F+ +EE+QDR+VV + N+KP+K+RG+ S+AM+L   C   SG+   V PL PP G   G  V V+  +  +   D      K ++K+   LQ+S+ L A + GK L+  +G + C+   G  I 
Sbjct:  109 DLRVGKVLSVEKHPDADALYVEKIDLGEAEPRTVVSGLVAFVPKEELQDRLVVLVCNMKPQKMRGVESQAMLL---CAFSSGDPCQVEPLDPPAGSCPGERVFVEGFENGQP-DDELKPKKKVFEKLQADLQISEDLVAQWKGKNLITAQGNLTCKSLKGGSIR 268          
The following BLAST results are available for this feature:
BLAST of Ggra6120.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJ525.050e-8460.91Tyrosine--tRNA ligase, cytoplasmic n=1 Tax=Gracila... [more]
R7QM311.760e-6962.13tRNA-binding domain-containing protein n=1 Tax=Cho... [more]
A0A0D6R3134.450e-3140.56tRNA-binding domain-containing protein n=1 Tax=Ara... [more]
A0A150H2618.810e-3140.46tRNA-binding domain-containing protein n=1 Tax=Gon... [more]
A9S3L03.560e-3043.56Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF01471.120e-2940.22uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S1MIW11.620e-2940.36Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A2D4PDJ31.420e-2739.02tRNA-binding domain-containing protein (Fragment) ... [more]
A0A6P8H3S18.190e-2741.29Tyrosine--tRNA ligase n=1 Tax=Actinia tenebrosa Ta... [more]
A0A2D4M0Z31.200e-2639.02tRNA-binding domain-containing protein n=3 Tax=Mic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 81..178
e-value: 9.3E-25
score: 86.6
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 75..182
score: 27.567852
NoneNo IPR availableGENE3D2.40.50.140coord: 74..240
e-value: 1.3E-42
score: 147.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..73
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 27..242
NoneNo IPR availablePANTHERPTHR11586:SF39TYROSINE--TRNA LIGASE, CYTOPLASMICcoord: 27..242
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 76..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:599933..600661 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6120.t1Ggra6120.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 599933..600661 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6120.t1 ID=Ggra6120.t1|Name=Ggra6120.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MDVLKPALDTLDTIISNVETALKAGSDVNKDDGNGASATLQTGKGNAPNG
KEKKKKKEKKPKQPLPPSRPVETTQFLQCDLRVGKVTEVKPHPESEKLYV
LQICYGNDETKTVCAGMREFLSEEEMQDRMVVTISNLKPRKLRGIASEAM
VLAGSCKTDSGEKETVVPLSPPEGVAEGSIVGVQDMDGERAVTDGKYVSG
KTWDKVVPRLQVSQGLACYDGKPLVVGEGKVKCEISDGAEIH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold