Ggra610.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra610.t1
Unique NameGgra610.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Homology
BLAST of Ggra610.t1 vs. uniprot
Match: R7QI07 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI07_CHOCR)

HSP 1 Score: 153 bits (387), Expect = 5.150e-41
Identity = 84/142 (59.15%), Postives = 97/142 (68.31%), Query Frame = 0
Query:  329 VQNGHRSSHQHGGHPYRGHARVFGPSAVVQLSNLGEEFLQDVRGLTNCFREEFSTYGHKLRHVEVKMAKGIAFIEYETMDGVRAAVSEWANGAKDVGPFKGIALNVSEKRPAYGGRRPGSMRGGRGGARGARRHRANLAPIS 470
             QNGHR +H       RGH RVFGP+AV+QL  L    LQD R L    REEF+ YG K+RHV+VK  K IAFIEYET++GVRAAV+ WANGA+  G F GI LNV+EKRP Y   RPGS RGGRGGA   RR+R    P+S
Sbjct:   28 AQNGHRPTHVGS----RGHPRVFGPTAVIQLGTLSSAQLQDTRALAGSLREEFNMYGFKVRHVDVKAQKSIAFIEYETIEGVRAAVAAWANGARQEGAFAGIPLNVTEKRP-YNKWRPGSARGGRGGAXXGRRNRPASTPLS 164          
BLAST of Ggra610.t1 vs. uniprot
Match: A0A7S1XDB3 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDB3_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-6
Identity = 115/479 (24.01%), Postives = 177/479 (36.95%), Query Frame = 0
Query:   14 VAQSFVNVYYRVAEKLPQRIVELYGSDSEIHHG------------DGLSAIGPAIAHVATKLPLAGAETTVNKVAAQQTGASAYLVVVHGTF--SKDSLSVTFTQTFVLEKQRDSHDVHFYCRNDIFTIL--PDTP--QP---SQNVSSEPEPVVAATLTDSASTSTPVEPSKPTSPPPVLSESPHAPQLVPDV-----------ASESLQPPNGMVPHNES-----DTHTQASSESXXXXXXXXXXPPSAVSLAADGGASADLANGDSKEPASVARSVPPARKTWASIVSSKDEVDGSTTVAAVPEEKAVAVVTPXXXXXXXXXXXXXXXXXXXXXTESKNAAQSTQRQENVQNGHRSSHQHGGHPYRGHARVFGPSAVVQLSNLGEEFLQDVRGLTNCFREEFSTYGHKLRHVEVKMAKGIAFIEYETMDGVRAAVSEWANGAKDVGPFKGIALNVSEKRPAYGGRRPGSMRGGRGG 455
            V   FV+ YY V  K+P+ +   Y  +SE+                G S I   IA    KL L    +T++    Q     A L+VV GT    +      FTQTF+L +Q       ++CRND+   L  P  P  QP   S + +SE  P    + +  A  S+  E S+    P    E+  AP                 AS++  P    V H E      D+  Q                     + +   +S+   +   ++P       P   K+WAS+ S     +G      + +E+A+                          +ES++    T  +  ++     +         G+ +  GPS  V           D   L    +EEFS YG  +  ++V++AKG AFI+ ++ + V  AV  W NG    GPF    LNV  +R      +P S + G GG
Sbjct:   18 VGNMFVSKYYDVLCKMPEHLYRFYNPESELSFSMGSEDNSERCTVRGTSNIQSLIAS-RPKLCLGSKLSTID---CQVAHDDAVLIVVTGTMIMPEHDRPKYFTQTFLLCRQPGG----YFCRNDVLRFLEPPSAPVAQPAPDSSSSASEANPPQELSSSXQAPXSSEAEKSEEEVKPTATDEA-EAPXXXXXXXXXXXXXXXXGASQTRDPEGDPVQHVEETITVRDSTPQTEVTGAPEPKEEPRPTAEVPKIVSPPASSSQTNHVPQQQPI---EETPGQTKSWASLFSK----NGKVQPPKLQKEQAIE---------NTGHHPGMSNGISAATSESESGDSQTTSRREIERPMSET--------IGNTQTVGPSVWVSALPT----TMDGPNLEASLKEEFSKYG-TVSSLDVRLAKGFAFIDMDSWENVNVAVDAWKNGPPTSGPFSNCKLNVQVRR------QPPSRKSGAGG 452          
The following BLAST results are available for this feature:
BLAST of Ggra610.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QI075.150e-4159.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XDB31.290e-624.01Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 312..466
e-value: 7.1E-6
score: 28.0
NoneNo IPR availableGENE3D3.10.450.50coord: 4..131
e-value: 1.4E-19
score: 72.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 441..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 313..337
NoneNo IPR availablePANTHERPTHR10693:SF20AT27578Pcoord: 4..459
NoneNo IPR availableCDDcd00590RRM_SFcoord: 357..435
e-value: 0.00213577
score: 34.9733
IPR002075Nuclear transport factor 2 domainPFAMPF02136NTF2coord: 14..126
e-value: 9.5E-9
score: 35.9
IPR039539Ras GTPase-activating protein-binding proteinPANTHERPTHR10693RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEINcoord: 4..459
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 14..128
score: 16.578976
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 7..128
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 377..463

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:142125..143537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra610.t1Ggra610.t1Gracilaria gracilis GNS1m malemRNAtig00000203_pilon 142125..143537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra610.t1 ID=Ggra610.t1|Name=Ggra610.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MGAAPKQPPSAARVAQSFVNVYYRVAEKLPQRIVELYGSDSEIHHGDGLS
AIGPAIAHVATKLPLAGAETTVNKVAAQQTGASAYLVVVHGTFSKDSLSV
TFTQTFVLEKQRDSHDVHFYCRNDIFTILPDTPQPSQNVSSEPEPVVAAT
LTDSASTSTPVEPSKPTSPPPVLSESPHAPQLVPDVASESLQPPNGMVPH
NESDTHTQASSESAAAASNEAASPPSAVSLAADGGASADLANGDSKEPAS
VARSVPPARKTWASIVSSKDEVDGSTTVAAVPEEKAVAVVTPVVTPVVAP
ELAKQIAEVVPSETESKNAAQSTQRQENVQNGHRSSHQHGGHPYRGHARV
FGPSAVVQLSNLGEEFLQDVRGLTNCFREEFSTYGHKLRHVEVKMAKGIA
FIEYETMDGVRAAVSEWANGAKDVGPFKGIALNVSEKRPAYGGRRPGSMR
GGRGGARGARRHRANLAPIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR002075NTF2_dom
IPR039539Ras_GTPase_bind_prot
IPR018222Nuclear_transport_factor_2_euk
IPR032710NTF2-like_dom_sf
IPR035979RBD_domain_sf