Ggra6090.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6090.t1
Unique NameGgra6090.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Homology
BLAST of Ggra6090.t1 vs. uniprot
Match: A0A2V3IXS7 (30S ribosomal protein S2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXS7_9FLOR)

HSP 1 Score: 324 bits (830), Expect = 2.850e-110
Identity = 148/184 (80.43%), Postives = 170/184 (92.39%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRARGRRLNRPSIAIPTSPSSQKGR 184
            MAPY+LGHRNGMH+++LD T  MLRRALI+ASHMAENDCTFLWLGP+D QK+KIVEKQA+KAGA+TI GARW+GGTLTNPIKSNQA+RFNYRIPDCVF+VD+ RHMPALREA+LCGIPTIGIVDSDCDP+ LTYPIPGNDD A AIYLYCSLM+ A+LDGRARGRRL+RPS+ IP+  S+Q+ R
Sbjct:   69 MAPYILGHRNGMHILNLDVTATMLRRALIAASHMAENDCTFLWLGPRDPQKSKIVEKQARKAGAYTIDGARWIGGTLTNPIKSNQAQRFNYRIPDCVFVVDTIRHMPALREARLCGIPTIGIVDSDCDPQFLTYPIPGNDDAALAIYLYCSLMKHALLDGRARGRRLSRPSVQIPSLKSAQRAR 252          
BLAST of Ggra6090.t1 vs. uniprot
Match: A0A7J7IRC1 (28S ribosomal protein S2, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRC1_9RHOD)

HSP 1 Score: 174 bits (440), Expect = 9.640e-52
Identity = 90/180 (50.00%), Postives = 115/180 (63.89%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRARGRRLNRPSIAIPTSPSS 180
            M  Y+ G RNGMHVIDL +T   LRRAL             LWLGPKD     IV  +A++AGAFT+ G RW+GGTLTNP++S Q  R   ++PD +F VD+ RH  AL+EA++  IPTI ++D+DCDP+  TY +PGND++A AI LYC+L   A LDG  R R  N P   I  + SS
Sbjct:   29 MRSYVFGKRNGMHVIDLQQTATCLRRALEVFQAAGRAGLRQLWLGPKDPLLENIVRMRARQAGAFTLLG-RWVGGTLTNPVESRQIRRLGGQLPDLLFCVDAHRHRTALKEARIVDIPTIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG-LRERAGNLPKDTIDPAKSS 206          
BLAST of Ggra6090.t1 vs. uniprot
Match: M1UXR0 (Mitochondrial ribosomal protein S2, mitochondrial n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1UXR0_CYAM1)

HSP 1 Score: 169 bits (427), Expect = 1.530e-49
Identity = 80/160 (50.00%), Postives = 106/160 (66.25%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDG 160
            M PY+ G RNGMH++DL ++   L+RAL             LWLGPKD     IV  +A++AGAFT+ G RW+GGTLTNP+ S Q  R    +PD +F VD+ RH  ALREA++  IP+I ++D+DCDP+  TY +PGND++A AI LYC+L   A LDG
Sbjct:   29 MRPYIYGERNGMHIVDLQQSAVCLKRALEVFRAAGRAGLRQLWLGPKDPFLESIVRTRARQAGAFTLSG-RWVGGTLTNPVASRQILRLGGHLPDLIFCVDAHRHRTALREARIVDIPSIAVIDTDCDPDWATYIVPGNDESARAIDLYCALAVQATLDG 187          
BLAST of Ggra6090.t1 vs. uniprot
Match: A0A7S1ETF3 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETF3_9RHOD)

HSP 1 Score: 168 bits (426), Expect = 4.900e-49
Identity = 81/179 (45.25%), Postives = 120/179 (67.04%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAG--AFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRARGRRLNRPSIA-IPT 176
            MAPY+LG RNGMH+I+LD+T  +L +AL  A  ++      LWLGPK+  ++K++ + A+K     FT    +W+ GTLTN  K+ + E F+Y++PD +F++D   +  A+REA   GIP IGIVD+DC+PE++TYPIPGND++  A++LY SLM  A+++G       +R  I  IPT
Sbjct:   38 MAPYILGVRNGMHIINLDRTVVLLSQALRFARELSYRSGRILWLGPKEPIQHKVLAEIAQKTPHVLFTKEYKKWVAGTLTNAGKTEKLEEFDYKLPDALFVLDCLHNYTAIREANQVGIPVIGIVDTDCNPEIVTYPIPGNDESTRALHLYSSLMSQAMIEGSKMAHHASRGKIPKIPT 216          
BLAST of Ggra6090.t1 vs. uniprot
Match: M2VZG4 (30S ribosomal protein S2 (Plastid) isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZG4_GALSU)

HSP 1 Score: 163 bits (413), Expect = 1.070e-46
Identity = 85/182 (46.70%), Postives = 119/182 (65.38%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRA--RGR---RLNRPSIAIPTS 177
            M  Y+LG RNG+H+I+L+ T   LRRAL     M   D   LWL PK  +   +  K A++  AF + G RW+ GTLTNP+ S QA++F Y++PD +F +D   H  AL+EA++ G+P++GIVD+DCDP  +TYPIPGND++A AI LYC L+  A+ +GR+  +GR   + NRP     TS
Sbjct:   96 MGRYILGERNGIHIINLEYTWTHLRRALRVIREMVALDGFVLWLPPKRNELASVARKIAEQGEAFMLDG-RWIPGTLTNPLGSGQAKKFRYKLPDMLFCLDCRFHTVALKEAQMTGVPSVGIVDTDCDPGQVTYPIPGNDESALAISLYCQLVVHAVGEGRSLSKGRMEIKPNRPRQPPNTS 276          
BLAST of Ggra6090.t1 vs. uniprot
Match: A0A5J4Z1M7 (30S ribosomal protein S2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1M7_PORPP)

HSP 1 Score: 135 bits (339), Expect = 1.160e-34
Identity = 67/184 (36.41%), Postives = 111/184 (60.33%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKD-MQKNKIVEKQAKKAGA-FTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRA--RGRRLNRPSIAIPTSPSS 180
            MAP++LG RNGMH+I+LDKT  ++  AL  A  +  +     WLGP++  Q + +V    +  GA F     RW+GG  TN  +    +RF  ++PD +F++D+ ++  A+ EA +  +  I ++D+DCDP+ + YPIPGND+++ A++LY S+M  A+ +G    R  + +R   A+ +S  S
Sbjct:   31 MAPFILGVRNGMHIINLDKTVVLMADALRFARELTASGGRIYWLGPREETQHDMLVSIAERTPGAIFQRKSKRWIGGMFTNAAQMGTLQRFGNKLPDALFVMDARKNRVAIAEANVMSMQVIAVLDTDCDPKEVQYPIPGNDESSLALHLYMSMMSHAMTEGHLLYRKTKQSRTPRAVASSSDS 214          
BLAST of Ggra6090.t1 vs. uniprot
Match: 28S ribosomal protein S2, mitochondrial n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C990CC (28S ribosomal protein S2, mitochondrial n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C990CC)

HSP 1 Score: 130 bits (328), Expect = 4.220e-34
Identity = 76/175 (43.43%), Postives = 106/175 (60.57%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIVDSTR-----HMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGR-ARGRRLNR 169
            M P+L G R G  + DLD+T E+LR+AL   +H+A ND   L+L  ++ Q   IVEK A + G ++    RW GGT TN  K   A     R+PD   ++++       H      AK+C IPT+GIVDS+C+P L+TYP+PGNDD   AI LYC L + AIL G+ AR ++L++
Sbjct:  103 MKPFLFGSRLGCLIFDLDQTAELLRQALNFTAHIAYNDGIILFLS-RNPQVTHIVEKTAMECGEYSHT-RRWKGGTFTNSTKEFGAVT---RLPDLCILLNTLNNVMLEHRAVSNAAKMC-IPTVGIVDSNCNPNLITYPVPGNDDTPCAIELYCKLFKQAILLGKEARAKKLSK 271          
BLAST of Ggra6090.t1 vs. uniprot
Match: RS2 (30S ribosomal protein S2 n=4 Tax=Dictyoglomus TaxID=13 RepID=RS2_DICTD)

HSP 1 Score: 129 bits (323), Expect = 1.210e-33
Identity = 80/201 (39.80%), Postives = 105/201 (52.24%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTN---------------PIKSN---------QAERFNY----------------RIPDCVFIVDSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGR 161
            M  Y+   RNG+H+IDL KT   L  A   A   A+   TFL++G K  Q  + +E++AK+ GAF +   RW+GG LTN                +K+N         QA R N                 RIPD ++IVD  R   A++EA   GIP I IVD++CDPEL+TYPIPGNDD   +I L  S +  AIL+GR
Sbjct:   27 MKEYIFSERNGIHIIDLQKTLVKLEEAYEFAKEQAKEGKTFLFVGTKK-QAQQTIEEEAKRCGAFYVN-QRWLGGMLTNFTTIKSRIDYMIKLEELKNNGYFDKLPKKQANRLNRELEKLIKVFDGLRGIERIPDVLYIVDPKREEIAVKEANKLGIPIIAIVDTNCDPELITYPIPGNDDAIRSIKLITSKIADAILEGR 225          
BLAST of Ggra6090.t1 vs. uniprot
Match: 28S ribosomal protein S2, mitochondrial n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C8D44 (28S ribosomal protein S2, mitochondrial n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C8D44)

HSP 1 Score: 129 bits (324), Expect = 1.280e-33
Identity = 77/171 (45.03%), Postives = 101/171 (59.06%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPD-CVFIVDSTRHMP---ALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRARGRRL 167
            M PYL G R G  +IDLD+T E+LR AL  A+H+A  D   L+L  +  Q   +VEK A + G F+    RW  GT TN  K  +A     R+PD C+FI      +    A+R+A    IPTIG+VD++CDP L+TYP+PGNDD   AI LYC L + AI  G+A   +L
Sbjct:   92 MRPYLFGSRQGHLIIDLDQTAELLRDALNIAAHIAFRDGIILFL-TRHPQAVHLVEKTAAECGEFSHA-RRWRDGTFTNSKKEFRAVT---RLPDLCIFITSLDTVLEPHNAIRDAAKMCIPTIGVVDTNCDPCLITYPVPGNDDTPSAIELYCKLFKTAIQRGKAARAKL 257          
BLAST of Ggra6090.t1 vs. uniprot
Match: A0A139WLL3 (28S ribosomal protein S2, mitochondrial-like protein n=2 Tax=Tribolium TaxID=7069 RepID=A0A139WLL3_TRICA)

HSP 1 Score: 128 bits (321), Expect = 2.600e-33
Identity = 75/170 (44.12%), Postives = 101/170 (59.41%), Query Frame = 0
Query:    1 MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQKNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPD-CVFIVDSTRHM---PALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYCSLMRLAILDGRARGRR 166
            M PY+ G R G  + DLDKT + LRRAL  A+H+A  D   L+L  +  Q + +VEK A++ G F      W GG  TN  K   A     R+PD C+F+      +    A+R++   GI TIGIVDS+CDP LLTYP+PGNDD+  +I LYC L + AIL G+ R ++
Sbjct:   81 MLPYIYGSRLGHIIFDLDKTADYLRRALNFAAHIAYRDGIILFL-LRGAQNSHLVEKTAQECGEFAHTRF-WRGGIFTNSTKQFGAVT---RLPDLCIFLNTLNNVLLQHTAVRDSAKMGIATIGIVDSNCDPNLLTYPVPGNDDSPASIELYCKLFKAAILRGKERRKK 245          
The following BLAST results are available for this feature:
BLAST of Ggra6090.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXS72.850e-11080.4330S ribosomal protein S2 n=1 Tax=Gracilariopsis ch... [more]
A0A7J7IRC19.640e-5250.0028S ribosomal protein S2, mitochondrial n=1 Tax=Cy... [more]
M1UXR01.530e-4950.00Mitochondrial ribosomal protein S2, mitochondrial ... [more]
A0A7S1ETF34.900e-4945.25Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2VZG41.070e-4646.7030S ribosomal protein S2 (Plastid) isoform 1 n=2 T... [more]
A0A5J4Z1M71.160e-3436.4130S ribosomal protein S2 n=1 Tax=Porphyridium purp... [more]
28S ribosomal protein S2, mitochondrial n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C990CC4.220e-3443.4328S ribosomal protein S2, mitochondrial n=1 Tax=Co... [more]
RS21.210e-3339.8030S ribosomal protein S2 n=4 Tax=Dictyoglomus TaxI... [more]
28S ribosomal protein S2, mitochondrial n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C8D441.280e-3345.0328S ribosomal protein S2, mitochondrial n=1 Tax=Ve... [more]
A0A139WLL32.600e-3344.1228S ribosomal protein S2, mitochondrial-like prote... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 11..20
score: 50.31
coord: 94..111
score: 32.31
coord: 132..146
score: 41.44
coord: 63..80
score: 34.62
coord: 111..122
score: 46.79
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 1..80
e-value: 1.2E-18
score: 67.1
coord: 91..160
e-value: 1.0E-22
score: 80.5
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 1..158
e-value: 7.09945E-56
score: 173.152
NoneNo IPR availableGENE3D3.40.50.10490coord: 1..181
e-value: 3.7E-51
score: 175.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..189
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 1..160
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 1..161
score: 10.75862
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 1..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:521448..522017 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6090.t1Ggra6090.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 521448..522017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6090.t1 ID=Ggra6090.t1|Name=Ggra6090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MAPYLLGHRNGMHVIDLDKTTEMLRRALISASHMAENDCTFLWLGPKDMQ
KNKIVEKQAKKAGAFTIGGARWMGGTLTNPIKSNQAERFNYRIPDCVFIV
DSTRHMPALREAKLCGIPTIGIVDSDCDPELLTYPIPGNDDNAHAIYLYC
SLMRLAILDGRARGRRLNRPSIAIPTSPSSQKGRSWGRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR023591Ribosomal_S2_flav_dom_sf