Ggra6034.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6034.t1
Unique NameGgra6034.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Homology
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BLAST of Ggra6034.t1 vs. uniprot
Match: A0A2V3J224 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J224_9FLOR)

HSP 1 Score: 462 bits (1188), Expect = 3.840e-161
Identity = 248/331 (74.92%), Postives = 271/331 (81.87%), Query Frame = 0 
Query:    6 GSHEPFHRRRFSRWAALHAWKLAGLTAFVTFIGVFIAVSLSLLLRPTRSYFFPLLSDVSKHQPEAAILRIAFAASTALFFATTTASLQHCRALQLFSQDAPSHIHPIDH----HVHMSDDDLSPIVAKATTPKRRFSKISPLPLLLILLLCAVLAYAVLQHLGISSFPRLVIRRPQLLKLAAYVLCVTWCIAMCFLIWYFLKLQHMPDRIHPDLPLQLGEGTESSTPRTGATAPHMFARVVQRIKLWASRLIVVLRPICLTGQAVCVIKIVGLWFALDSFSISKIKLVKIALLAALAFAEYTAAFFFAFFMTILAVDMRSKASTPDILLYA 332
            GS+EPF RRRFSRWAALHAWKLAGLTA VTF+GVFIAVSLSL+LRPTRSYFFPL SDVSKHQPEAAILR+AF  +T L FAT TAS+QHCRALQ FS D+    HP+ H    HVH+SDDDLS I  KA TPKRR S  S   LLL  L   +L  AVLQ+LG+++FP   IRR  LLKL  Y+ C TW  AMCFLIWYFLKLQHMP+R+HPDLPLQLGEGTESSTPRT         RV QR++ WA+ LIV+LRPICLTGQAVCVIKIVGLWFALDSFSISKIKLVK+ALLAALAFAEYTA FFFAFFMTILAVDMRSKASTPD+LLYA
Sbjct:    6 GSNEPFPRRRFSRWAALHAWKLAGLTALVTFVGVFIAVSLSLVLRPTRSYFFPLFSDVSKHQPEAAILRLAFVVATTLLFATATASVQHCRALQFFSTDS----HPLPHTPTDHVHLSDDDLSTIATKAATPKRRLSTFSIPHLLLFALTATLLTLAVLQYLGVTNFPTPTIRRVHLLKLGLYLFCTTWLFAMCFLIWYFLKLQHMPNRVHPDLPLQLGEGTESSTPRTHTLPNTPANRVAQRLRTWATHLIVILRPICLTGQAVCVIKIVGLWFALDSFSISKIKLVKLALLAALAFAEYTATFFFAFFMTILAVDMRSKASTPDLLLYA 332
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BLAST of Ggra6034.t1 vs. uniprot
Match: R7QVB2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVB2_CHOCR)

HSP 1 Score: 123 bits (308), Expect = 3.060e-30
Identity = 65/115 (56.52%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:  177 QLLKLAAYVLCVTWCIAMCFLIWYFLKLQHMPDRIHPDLPLQLGEGTESSTPRTGATAPHMFARVVQRIKLWASRLIVVLRPICLTGQAVCVIKIVGLWFALDSFSISKIKLVKI 291
             L++   Y+LC TWC+AM FL+WYFLKLQ +PDR    LP  + E  ++S P+T        AR+V R + WA+  IV+LRPICLTGQ VCVIKIVGLW ALD+FSIS I+ VKI
Sbjct:   26 HLIRFGIYLLCTTWCLAMGFLVWYFLKLQGIPDRTATSLP-DVIEDVDNSFPQTSEFTTSR-ARIVDRFRAWAAWCIVILRPICLTGQVVCVIKIVGLWLALDTFSISNIRFVKI 138
The following BLAST results are available for this feature:
BLAST of Ggra6034.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2243.840e-16174.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QVB23.060e-3056.52Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019402Frag1/DRAM/Sfk1PFAMPF10277Frag1coord: 30..320
e-value: 1.7E-7
score: 31.0
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 290..317
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 279..289
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 318..332
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 203..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..161
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 162..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..202
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 254..278
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..142
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 254..276
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 70..92
NoneNo IPR availableTMHMMTMhelixcoord: 291..313

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:181598..182596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6034.t1Ggra6034.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 181598..182596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6034.t1 ID=Ggra6034.t1|Name=Ggra6034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MHVKQGSHEPFHRRRFSRWAALHAWKLAGLTAFVTFIGVFIAVSLSLLLR
PTRSYFFPLLSDVSKHQPEAAILRIAFAASTALFFATTTASLQHCRALQL
FSQDAPSHIHPIDHHVHMSDDDLSPIVAKATTPKRRFSKISPLPLLLILL
LCAVLAYAVLQHLGISSFPRLVIRRPQLLKLAAYVLCVTWCIAMCFLIWY
FLKLQHMPDRIHPDLPLQLGEGTESSTPRTGATAPHMFARVVQRIKLWAS
RLIVVLRPICLTGQAVCVIKIVGLWFALDSFSISKIKLVKIALLAALAFA
EYTAAFFFAFFMTILAVDMRSKASTPDILLYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019402Frag1/DRAM/Sfk1