Ggra6019.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6019.t1
Unique NameGgra6019.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Homology
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 1.820e-60
Identity = 130/377 (34.48%), Postives = 199/377 (52.79%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGP---TLIERKGEAEPCRFLASNDGRENFTSTTFRFSPIVHSCLDADETKIWQ------------NGGNLFEDEGFVVQCSEKLYSFDRETHFDESLPEDHVVECTSVRIINPQEEEIEIELCSFSYRKGNRVTFSELLTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKEQVDATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAVMDKDIRGDENPVVSTADLEGNRFVLI--SCSPNSEQGGSG 360
            M++IPLKSQY SL ++ IS  +E+  L AVL +N + EC+ALQ G  + VR H  RTK +       F+ +E+ SSFYS P   T + RK     C  L +   ++   + + + + +   C+  + T  WQ            NGGN+ +DE F  +  E LY+ + E   DE +P+++VV C                 C F YR GN VTF++ +   D++ V ++  ++ +W T + ++V+G E  FA+RAV  LS+G  D   LRR VF+      C FK   DAT V    IY +V  W  ++  F  S   R   F++MS+PLHWAQ+ + D D+   +NPVV+T    G+R +L+  S +P+ ++   G
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKN----CTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVGCVGTS-------------CVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSAPSEQESSIG 360          
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3ISI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 196 bits (499), Expect = 4.070e-56
Identity = 120/363 (33.06%), Postives = 196/363 (53.99%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEA-EPCRFLASNDGRENFTSTTFRFSPIVHSCLDADETKIWQNGGNLFEDEGFVVQCSEKLYSFDRETHFDESLPEDHVVECTSVRIINPQEEEIEIELCSFSYRKGNRVTFSELLTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKEQVDATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAVMDKDIRGDENPVVSTADLEGNRFVLI--SCSPNSEQGGSG 360
            M++IPLKSQY SL  + +S  +E+  L AVL +N + EC+AL+ G  + VR H  RT+ +       F+ +E+ +SF+S P L  ++GE  + C  L +   R      + R + +  +CL  + + +WQ  GN+  D+G +    + L+S D     +E +P++H +EC           + E+ LC+F Y  G+ VTF+E++  +DL+ V D   ++ +W T V+++ +G ERE   R++        D+  LRR+VF+   E  C F     AT +    +Y +   W  +L  F  SL  R   F++MS+PL WA++ V D+D    +NPVV+T    G RFVL+  S +P+ E+   G
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPAL--KRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNI-SDDGEIKCGDDFLFSADIHHSPNEPVPDEHTMECIL---------DGELNLCAFLYSNGSEVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSSAPSEEESNVG 351          
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 145 bits (366), Expect = 2.870e-36
Identity = 115/375 (30.67%), Postives = 183/375 (48.80%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEAEPCRFLASNDGRENFTSTTFRFSPIVHSCLDADETKIWQNGGN--LFEDEGFVVQCSEK-LYSFDRETHFDESLPE---------DHVVECTSVRIINPQEEEIEIELCSFSYRKGNRVTFSEL-----LTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKEQV-DATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAV--MDKDIRGDENPVVSTADLEGNRFVLISCSPNSE 355
            M+ IPLKSQ+VSL ++ IS  +E+    A+L +N + EC AL+KG+ ++VR H  R K +    + +FI +E++ SF+S P  IE K   + C  +   D RE FT  T     I+  C+   +    Q  GN  L  +    V+C +  LY +  E     +L           D V+EC        ++   E    +      N + F+ +     +  S++  + ++   I    T V ++ SG  R FA R +    K   D +E+R++VF       C F+ +  D T V   L+Y +V  WI + L F  +LL R   F++MS+PLHWAQR    +D+ I G  NPVV++    G R + +S S +++
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPA-IEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVG--NPVVTSVYEHGERLMYVSGSASND 372          
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 141 bits (355), Expect = 5.110e-35
Identity = 117/374 (31.28%), Postives = 183/374 (48.93%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEAEPCRFLASNDGRENFTSTTFRFSPIVHSCLDADETKIWQNGGNLFEDEGFVVQCSEKL-YSFDRETHFDESLPEDHVVECTSVRIINPQEEE---------IEIELCSF-SYRKGNRVTFSELLTRSDLNSVTDKFESIEMWHTDVFFDVSGRER--EFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKEQVDATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAVM--DKDIRGDENPVVSTADLEGNRFVLISCSPNSEQGGS 359
            M++IPLKSQYVSL  + IS  +E+  L A+L  N +CEC ALQKG  ++V RH NR   +   T + F  +E+L SFYS P  ++   +++PC  + +   R     T+     IV SC+  +E+ I+   GN +  E   V+C+E     F  E H   SLP   +    +V   NP  +          + I+  S+ S      V FS++    +++ +      I+  +T +F   +  E   +FA R +    +   D  ELRR +F       C+F+   +ATEV   +I  +  VW+ +L  + ++LL     F+++SNP+HWA+R     D+ + GD  P VS   LE    V+     N E  GS
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPA-VKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGN-YSMETRKVECAESATLMFTLEPHV--SLP---IGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGD--PSVSRV-LENGHHVMYVSGSNPEGNGS 364          
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3J6F3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 122 bits (305), Expect = 4.260e-28
Identity = 108/357 (30.25%), Postives = 163/357 (45.66%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEAEPCRFLASNDGRENFTSTTF-RFSPIVHSCLDADETKIWQNGGNLFEDEGFVVQCS-EKLYSFDRETHFDESLPEDHVVECTSVRIINPQEEEIEIELCSFSYRKGNRVTFSELLTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKE-QVDATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAVMDKDIRGDENPVVSTADLEGNRFVLISCSPNS 354
            M++I LK+ +VS+ ++ +S  +E+  L  +   N   ECK LQ+G+S+ VR+HL RT+L+    +  F  +E++ SFY+ P +   + E   C   ASN  +++  ST F R S I+  C   D   I Q GGN F      V+CS E +Y+        E +  D    C S           E   C F  ++GN    S      +L+ + D    I    T++ F        FA+RA     +       LRR ++S   E  C F   +  AT V  A+I  +  VW   L MF      R   FF + +P+HWA R+V   D    +NPV++    +    V IS S +S
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDP-VNNVQIEIHEC-ITASNSVKDSGDSTQFLRASDILVECRRLDNGTITQFGGN-FSSRTQQVECSTEAMYTHPLGDETSEEIVADVPFGCVS--------GGEEGAACVFVQQRGNLSLISAPFFLDELSILPDTLPHII---TELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADDPLGDNPVLTGLMQDDKTLVHISTSESS 343          
BLAST of Ggra6019.t1 vs. uniprot
Match: A0A2V3ICZ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ9_9FLOR)

HSP 1 Score: 73.9 bits (180), Expect = 5.370e-11
Identity = 88/359 (24.51%), Postives = 153/359 (42.62%), Query Frame = 0
Query:    1 MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTVRRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEAEPCRFLASNDGRENFTSTTFRFSPIVHSCLDADETKIW-QNGGNLFEDEGFVVQCSEKLYSFDRETHFDESLPEDHVVECTSVRIINPQ----EEEIEIELCSFSYRKGNRVTFSELLTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEIDEVELRRKVFSTDGEGMCRFKEQVDATEVSSALIYVMVGVWITTLLMFTVSLLFRSHNFFNMSNPLHWAQRAV--MDKDIRGDENPVVSTADLEGNRFVLISCSP 352
            M+VI +KSQ VSLFI+  +A +E+ F   VL +    E   L+ GKSL+VR H           I+ FIIVEI+    S    +      EPC     N G+E FTS        +     +     W Q     F     VV C+            DE + E H+ + +  +I   +    E E  +  CSF+  +    +F+ELL   + +    KF  ++++      D+  +      R + H  +  +D   +  +V        C F +  +AT V   L+ V+V +W+ ++L+F           F+++  L W++  +  M  + +G ++ ++ST  ++  +   +   P
Sbjct:    1 MVVIGVKSQVVSLFITLATAVAELSFTTGVLLFISSREWSKLENGKSLSVRGHQRVVSQTLAACIAAFIIVEIIVGA-SIEDELRMTPFTEPCVQTGINTGQE-FTSIEQPSRSYLAQTSCSKFKDFWLQIFLTNFSVTSTVVSCA------------DEPVYELHIRDRSRRQIGQAKPYCGENEWGVTFCSFTSLETGTFSFTELLDEGEKSMNETKFIDVKLFFEPDSQDIISKR---LLRVILH-GESAMDLDAILSRVLLGSRLSTCTFFKARNATRVPVVLMCVLVSIWLCSILLFVCVACSSRKMLFDLNKSLDWSKVLLPPMGVNDKGIDDAMISTRSVDDTQVYFLQLLP 341          
The following BLAST results are available for this feature:
BLAST of Ggra6019.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J5C21.820e-6034.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI74.070e-5633.06Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT052.870e-3630.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A05.110e-3531.28Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6F34.260e-2830.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICZ95.370e-1124.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..280
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 304..361
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 281..303
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 281..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:150947..152032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6019.t1Ggra6019.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 150947..152032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6019.t1 ID=Ggra6019.t1|Name=Ggra6019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MIVIPLKSQYVSLFISFISAASEIVFLLAVLNWNCFCECKALQKGKSLTV
RRHLNRTKLVGFTTISIFIIVEILSSFYSGPTLIERKGEAEPCRFLASND
GRENFTSTTFRFSPIVHSCLDADETKIWQNGGNLFEDEGFVVQCSEKLYS
FDRETHFDESLPEDHVVECTSVRIINPQEEEIEIELCSFSYRKGNRVTFS
ELLTRSDLNSVTDKFESIEMWHTDVFFDVSGREREFASRAVFHLSKGEID
EVELRRKVFSTDGEGMCRFKEQVDATEVSSALIYVMVGVWITTLLMFTVS
LLFRSHNFFNMSNPLHWAQRAVMDKDIRGDENPVVSTADLEGNRFVLISC
SPNSEQGGSGA*
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