Ggra5984.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5984.t1
Unique NameGgra5984.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length934
Homology
BLAST of Ggra5984.t1 vs. uniprot
Match: A0A2V3IYQ1 (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYQ1_9FLOR)

HSP 1 Score: 679 bits (1753), Expect = 1.360e-226
Identity = 437/1002 (43.61%), Postives = 554/1002 (55.29%), Query Frame = 0
Query:   45 SFTLVEMPTVKIVPPRS-WKLDEDQTAPSTTQ--------QLTQSSHPSSQIHDLLSKSSPVTMPTGPVQLVTNAKIVSKTATRSDAHSANGRVSLNLRIRQHYPTSAPP--SQQLKISIKTNLP-APSSHTPQVETSQNRTVDEEGKEP--TTEQNTLNENVEEKLNFKGDIAR---QEHNVYSSNLDP-----KLTNNNLQSATKAAXXXXXXXXXXXXXEVSPVTVTQQRDGSENDQ---QAPPVPNEQLRLLPVLSLPNGSSISHQHNLESRLTSSQLKVRVCFSCSRGAPCRGLVPCADCDHALHIHCSIPPMESVPSYPWRCPSCLAKKKSSVETKSVAVQTDDRISNYLKDNSRTWLPAKLRNKPKMADILPPEPKRRTLPDPAISVPFKYSRPIRLENGAIVPIRYIVDGRRAWYSDDDEPEEDYVAAYADVDAYELPANIKSCEYCAVRH-------------------------------------------------------------------------------------SADDSDLEGTGLRVSAAHQKSRYGRTVRNRAGNRLDFDVPSNEESPQEQPVEPPSLQGTSD-----ARNNAMKRRMWFYSSDRLMDGQMGAGHVPDQPMDQDERNRIRRSKSDHGPSFARDAYECNDSDIFADKHGKHRKRNAVHAFEM-GDSRGYSQMPG----GPMQNLHTDANQSLAIKRMKTEDE--GLWDSSR-YARRRTKRPAFYGSEYDGHGAREDPNFGSRKQRPPLSKPGKGYKFCHMCSAQIANRRFFCTHCGAENPSAKRKAIKITPDVKDPKPRGRPPKSSRQITDLSLGAVRTGEAPHLKDASRPAEVRRSSEXXXXXXXXRPKESQKDLEEPYALQMEDLRVLRENGYRSIEEMIASPPMEVDDLFDKYWPTRCYKLYLRITKRRKALSTGPQVQESSKGDIGIEDVIDVEGVHSYHHSPDSGSLSDDDKQSPFESDGIPQGEE 923
              T   MPTV    P + W +D D    +           Q+  S+ P  QIHDL++KSSP  +P GPVQLVT+AKIV      +D  +A+GRVSLNLRIR+ YP S     +QQ+      N+  A   ++  +    NR    + K+P  T   NT  ++    +     I+    +E     +   P     KL +  L S  KA              EVSPVTVTQQ++GS        AP VP E+L+LL +L +PNG+S+    + E     ++   RVCF CS+ +P   L+ C +CD ALHIHCS PP+  +PS+PWRCP CL K++SSV TKSVAVQTDDR S YL D SR WLP KLR KPK+A +LPP+P+RR+LP PA+SVPFKYSRPIRLENGA+VPIRY+VDG RAW+SDD+E +EDY AAYADVDAY+LP NIKSCEYCAVRH                                                                                     SADDSDL+   +  +AA Q++R+ R VRNR G RLDFD+ SN+ S  +   E P L G+S       R        W++SS   ++G    G+  DQP D ++RNRIR  +++H     R +YE  D+  +  K GK RKR+A+HAFE  GDSR  SQ+P     G ++++  D      +KR+KT+ +   LWDS R YARRR K+PAFYGSE D    RE+ N G+RK RPPLSKPGKGYKFCH CSAQIANRRF+CT CGAENPSA+RK IK+  + K+PKPRGRPPKSSRQ    +L A       HL+                               +PY L+ ED RVLRENGY +IEEM+A+PP EVDDLFD YWPTRCYKLYLRI + +    T  +        I    V  VEG     +SP+S S+SD+DK S F S+  P  EE
Sbjct:  132 GLTPAIMPTVNFAHPHNMWIVDGDPPISNPPXXXXXXXXXQVLPSTVPQPQIHDLVTKSSPANLPEGPVQLVTDAKIVKGPPQSADPDNADGRVSLNLRIREQYPVSTAQHGTQQISSQPMENISLADDPNSDHLSKDVNRP---KLKQPSLTVVNNTDPDHGRPSIKAGAPISAVVCKESTSKQAQKPPVKAILKLPHKGLLSGLKAKEKK----------EVSPVTVTQQQEGSGKSNILPAAPSVPQEKLQLLSILHVPNGASLEQGKHSEIVNKLTETSKRVCFICSQTSPTAALILCVECDQALHIHCSNPPLSRLPSFPWRCPQCLNKRRSSVTTKSVAVQTDDRTSVYLSDGSRDWLPLKLRYKPKIAGLLPPQPRRRSLPAPAVSVPFKYSRPIRLENGAVVPIRYVVDGCRAWFSDDEEQDEDYSAAYADVDAYDLPPNIKSCEYCAVRHPGTFGSGRFCSTKCARTVGGLSRRKYPEHDGTEGGDRPRGXXXXXXXXXXXXXXXXXXXXXXXSAMIANVPHEHVMHMGAEFLPDSADDSDLDANEVPSAAALQRNRFRRPVRNRTGGRLDFDLQSNDNSLPDASAERPPLHGSSHIDVQGTRKTGSNAGNWYFSSQIGLEGHAAVGNDSDQPADGEDRNRIREPRTEHRFD-GRGSYEYTDT--YPHKPGKQRKRSAIHAFEAYGDSRRLSQLPPIDRIGNLESIDGDQ----PVKRVKTDRDMDSLWDSPRAYARRRIKKPAFYGSELDRR-MREEANMGTRKARPPLSKPGKGYKFCHKCSAQIANRRFYCTECGAENPSARRKVIKVPSEAKEPKPRGRPPKSSRQNGSSTLAAALAAAESHLR-------------------------------KPYILEAEDRRVLRENGYATIEEMMANPPEEVDDLFDAYWPTRCYKLYLRIRRSQHETLTSRREDRQKSTHI----VRHVEG-----NSPESVSISDEDKHSHFASESAPNDEE 1072          
BLAST of Ggra5984.t1 vs. uniprot
Match: R7QR76 (PHD-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR76_CHOCR)

HSP 1 Score: 231 bits (588), Expect = 9.940e-60
Identity = 199/712 (27.95%), Postives = 292/712 (41.01%), Query Frame = 0
Query:  304 RVCFSCSRGAPCRGLVPCADCDHALHIHCSIPPMESVPSYPWRCPSCL---AKKKSSVETKSVAVQTDDRISNYLKDNSRTWLPAKLRNKPKMADILPPEPKRRTLPDPAISVPFKYSRPIRLENGAIVPIRYIVDGRRAWYSDD--DEPEEDYVAAYADVDAYELPANIKSCEYCAVRHSA-----------------------------DDSDLEGTGLRVSA----------------------------------------------------------------AH--QKSRYGRTVRNRAGNRLDFDVPSNEESP-------QEQPVEPPSLQGTSDARNNAMKRRMWFYSSDRLMDGQMGAGHVPDQPMDQDERNRIRRSKSD-HGPSF----ARDAYECNDSDIFADKHGKHRKR------NAVHAFEMGDSRGYSQMPGGPMQNLHTDANQSLAIKRMKT-------------EDEGLWDSSRYARRRTKRPAFYGSEYDGHGAREDPNFGSRKQRPPLSKPGKGYKFCHMCSAQIANRRFFCTHCGAENPSAKRKAIKITPDVKDPKPRGRPPKSSRQITDLSLGAVRTGEAPHLKDASRPAEVRRSSEXXXXXXXXRPKESQKDLEEPYALQMEDLRVLRENGYRSIEEMIASPPMEV-DDLFDKYWPTRCYKLYLRITK--RRKALSTGPQVQESSKGDI 881
            R+C  C + AP   ++PCA+C   +H HC  PP+ ++P+YPWRCP CL   A + ++   +S   QTDDR+S YL D  R WLP KLRNKP  A  LP +P+ + LP PAI+ P +Y RP+RL +GA+VPIRY+ D  RA+ S D  D+  ED V  YA  D +++  N+KSCEYC+  H                               D+    G GL V                                                                  AH   +SRYGR VRNR    +D +V   E S         E    P +L   + AR +A     W   S  +       G   +     D  N   + K+   GP        D +  N++  F  K  +++KR      N  +  EM     YS  P    ++ +T +     + + K              E  G   S+     R K     GS+ +  G    P   ++ +   + +PGKGYKFCH C   IANRRFFCT CGA NPSAKR     TP V              Q+    +   +  +      +S+ AE+                    D  +  AL++++L++L   GY++ + ++++PP+E  ++    Y  T C++ Y R+ +  RR A     +   S KG +
Sbjct:  210 RICQFCRKSAPSAAMIPCAECRDGMHTHCVNPPLSTIPAYPWRCPKCLKVRANRMAACMVRSAGTQTDDRVSIYLADKQRDWLPLKLRNKPNQAPCLPSKPRHKALPSPAIAPPVRYGRPVRLASGAVVPIRYVADSFRAYSSGDEADDGFEDDVI-YAASDDFQIAHNLKSCEYCSTPHPGTFGSGRFCSSKCARTVGGLSRRKFNQERRDEYAEGGRGLVVEGISNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTHFSDRPTLPLGIIPEDDEDDPDPEVLPNAHVSHRSRYGRVVRNRTPGAIDANVNGRENSSGGPSYDDAEDGKSPTNLPFQASARESASTAG-W---SRNVRHASELEGDTKEMQFSDDSHNSTHKMKAQSQGPHLPATEGSDGHALNENG-FQRKSNRNKKRSFTYMENPENGLEM-----YSDQPDAMSRHDNTHSRDEPYVPQAKKHRNETRLLGTETPELAGKVSSAEQKDIRQKGTFRGGSDKNRSGK---PLTSAKSRSSGVLRPGKGYKFCHECGELIANRRFFCTLCGAANPSAKR-----TPRV--------------QVNAKDISGGKPPQHKAKGSSSKHAEL-------------------SDPRKSPALRIQELQLLSACGYKTEKNILSNPPVEPPENDSPPYTATVCWEAYQRVLRERRRTAKKASTKASSSVKGQL 869          
The following BLAST results are available for this feature:
BLAST of Ggra5984.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IYQ11.360e-22643.61Methyl-CpG-binding domain-containing protein 9 n=1... [more]
R7QR769.940e-6027.95PHD-type domain-containing protein n=1 Tax=Chondru... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 305..351
e-value: 2.1E-6
score: 37.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 222..365
e-value: 2.2E-11
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..542
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 890..926
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 676..693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 561..591
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 676..702
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..812
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 570..591
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..756
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 890..913
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 518..542
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..933
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 303..353
score: 8.7157
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 302..356

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000227_piloncontigtig00000227_pilon:64091..67706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5984.t1Ggra5984.t1Gracilaria gracilis GNS1m malemRNAtig00000227_pilon 64091..67706 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5984.t1 ID=Ggra5984.t1|Name=Ggra5984.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=934bp
MADVVLVAACVKSALSLPPTATVPPVCSFFVCPSCARQLYFLCLSFTLVE
MPTVKIVPPRSWKLDEDQTAPSTTQQLTQSSHPSSQIHDLLSKSSPVTMP
TGPVQLVTNAKIVSKTATRSDAHSANGRVSLNLRIRQHYPTSAPPSQQLK
ISIKTNLPAPSSHTPQVETSQNRTVDEEGKEPTTEQNTLNENVEEKLNFK
GDIARQEHNVYSSNLDPKLTNNNLQSATKAAATKAAATKAVGKKEVSPVT
VTQQRDGSENDQQAPPVPNEQLRLLPVLSLPNGSSISHQHNLESRLTSSQ
LKVRVCFSCSRGAPCRGLVPCADCDHALHIHCSIPPMESVPSYPWRCPSC
LAKKKSSVETKSVAVQTDDRISNYLKDNSRTWLPAKLRNKPKMADILPPE
PKRRTLPDPAISVPFKYSRPIRLENGAIVPIRYIVDGRRAWYSDDDEPEE
DYVAAYADVDAYELPANIKSCEYCAVRHSADDSDLEGTGLRVSAAHQKSR
YGRTVRNRAGNRLDFDVPSNEESPQEQPVEPPSLQGTSDARNNAMKRRMW
FYSSDRLMDGQMGAGHVPDQPMDQDERNRIRRSKSDHGPSFARDAYECND
SDIFADKHGKHRKRNAVHAFEMGDSRGYSQMPGGPMQNLHTDANQSLAIK
RMKTEDEGLWDSSRYARRRTKRPAFYGSEYDGHGAREDPNFGSRKQRPPL
SKPGKGYKFCHMCSAQIANRRFFCTHCGAENPSAKRKAIKITPDVKDPKP
RGRPPKSSRQITDLSLGAVRTGEAPHLKDASRPAEVRRSSEVPQSEGVPR
PKESQKDLEEPYALQMEDLRVLRENGYRSIEEMIASPPMEVDDLFDKYWP
TRCYKLYLRITKRRKALSTGPQVQESSKGDIGIEDVIDVEGVHSYHHSPD
SGSLSDDDKQSPFESDGIPQGEEDAEDILECLI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD