Ggra596.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra596.t1
Unique NameGgra596.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Homology
BLAST of Ggra596.t1 vs. uniprot
Match: A0A2V3IWU6 (Regulator of telomere elongation helicase 1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWU6_9FLOR)

HSP 1 Score: 303 bits (775), Expect = 1.770e-94
Identity = 142/197 (72.08%), Postives = 167/197 (84.77%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNKRVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKIAELAEDDQK 197
            +Q RW+ SG WE L   KG VL EPN RGEDFDN+VN YQ +S SE GALL AVCRGKLSEGIDF+D +SR V+L+GIPFPYI DVVVNRK+AWNDRTR EKKR ELQSG  WYEMQA+RA+NQALGR LRHRYDYGAILLVDCRFR+KRV  +LP WT++A++ TN SHE IV+GL+QFY+TVQ+KI +LA++DQ+
Sbjct:  678 LQARWKASGVWEELAGSKGAVLTEPNHRGEDFDNVVNVYQSASYSECGALLLAVCRGKLSEGIDFKDASSRAVVLIGIPFPYIGDVVVNRKKAWNDRTRAEKKRSELQSGNAWYEMQAFRALNQALGRTLRHRYDYGAILLVDCRFRSKRVSSKLPEWTQQALKRTNDSHECIVEGLKQFYSTVQQKIMDLADEDQR 874          
BLAST of Ggra596.t1 vs. uniprot
Match: R7Q4V3 (Helicase ATP-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V3_CHOCR)

HSP 1 Score: 271 bits (694), Expect = 2.650e-82
Identity = 127/189 (67.20%), Postives = 153/189 (80.95%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNKRVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKIA 189
            +  RW+ SGAW++L  +K  VL+EP++RGEDFD IV  YQ +S S+ GA+LF VCRGKLSEG+DFRD TSRGVILVGIPFPY  DVVV+RKR WNDRTR  K   +LQSG EWYEMQAYRA+NQALGRA+RHRYDYGA+LL+DCRFR K V  QLP WT+  I+ T+ SH  +++GLQ+FY TVQE+IA
Sbjct:  746 LHTRWKGSGAWDKLYTVKNTVLVEPHRRGEDFDEIVGRYQAASESDGGAILFGVCRGKLSEGVDFRDATSRGVILVGIPFPYFGDVVVSRKRQWNDRTRKNKTESKLQSGTEWYEMQAYRALNQALGRAVRHRYDYGAVLLLDCRFRQKHVLKQLPKWTQAGIQQTDGSHGALLRGLQRFYDTVQEQIA 934          
BLAST of Ggra596.t1 vs. uniprot
Match: A0A444SP57 (Fanconi anemia group J protein-like (Fragment) n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444SP57_ARMVU)

HSP 1 Score: 155 bits (392), Expect = 2.060e-43
Identity = 91/209 (43.54%), Postives = 127/209 (60.77%), Query Frame = 0
Query:    4 RWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRS--------SGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFR--------NKRVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKIAELAEDDQ 196
            RWQ S  WE ++ +K V + EP +  EDF+N +  +  +         G  +GAL  AVCRGK+SEG+DF D+ +R VI VGIPFP  +D+ VN KR +ND+    K    L +GGEWYE+QAYRA+NQALGR +RHRYD+GAI+LVD R++        N+ V G L  W R +++    S + IV  L++F   +QE      E ++
Sbjct:   61 RWQRSSIWEEIEKVK-VPITEP-RNSEDFENSMKLFYSTIERTKDCKEGEVNGALFIAVCRGKVSEGMDFIDDNARAVIAVGIPFPNTKDIQVNLKREYNDKFSKSK---GLLTGGEWYEIQAYRALNQALGRCIRHRYDWGAIILVDERYQRAGYGNNLNRYVKG-LSKWVRNSLKH-EPSFDVIVSELKKFSNFMQESSLNWTEKEE 262          
BLAST of Ggra596.t1 vs. uniprot
Match: A0A6D2I1R0 (Helicase ATP-binding domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I1R0_9BRAS)

HSP 1 Score: 163 bits (413), Expect = 5.510e-43
Identity = 81/188 (43.09%), Postives = 115/188 (61.17%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNKRVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKI 188
            +  RWQ +G W RL +IK   +       +DFD ++  Y      + GA   AVCRGK+SEG+DF D+ +R VIL+GIPFP + D++V  KR +ND  +  K    L  G EWY  QAYRA+NQA GR +RHR+DYGAI+ +D R+R  R    +  W R++I     S E  ++GL+ F+ TV+E++
Sbjct:  526 LSTRWQETGQWSRLCSIKENFIEPRGGAKDDFDAVLKGYYDCIREKKGAAFLAVCRGKVSEGLDFSDDNARAVILIGIPFPNLHDILVELKRKYNDTYKSSK---NLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYRQPRNRASISKWLRQSIN-LYDSFESSMEGLKSFFNTVKERV 709          
BLAST of Ggra596.t1 vs. uniprot
Match: A0A8C6W417 (BRCA1 interacting protein C-terminal helicase 1 n=2 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6W417_NANGA)

HSP 1 Score: 161 bits (407), Expect = 3.560e-42
Identity = 90/204 (44.12%), Postives = 130/204 (63.73%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGE--DFDNIVNAYQ---RSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNK--RVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKIAELAEDDQK 197
            ++ RW  +G W  L+ +K  V++EP Q GE  DFD ++  Y    +  G + GALL AVCRGK+SEG+DF D+ +R VI VGIPFP ++D+ V  KR +ND   H  K   L  G +WYE+QAYRA+NQALGR +RH+ D+GA++LVD RF N   R    L  W R+ I+  +SS    ++ L +F +   +K+ +L++ D+K
Sbjct:  703 LRERWVFTGLWHSLELVK-TVIVEP-QGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITVGIPFPNVKDLQVELKRQYND---HHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPNRYISGLSKWVRQQIQH-HSSFASALESLTEF-SKEHQKVTDLSKKDRK 899          
BLAST of Ggra596.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Ochotona princeps TaxID=9978 RepID=UPI00032B0869 (LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Ochotona princeps TaxID=9978 RepID=UPI00032B0869)

HSP 1 Score: 161 bits (407), Expect = 3.580e-42
Identity = 88/187 (47.06%), Postives = 122/187 (65.24%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGE--DFDNIVNAYQ---RSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNK--RVCGQLPGWTREAIRGTNSSHEDIVQGLQQF 180
            ++ RW  +G WE L+ +K  V++EP Q GE  DFD ++  Y    +  G++ GALL AVCRGK+SEG+DF D+ +R VI +GIPFP ++D+ V  KR +ND   H  K   L  G +WYE+QAYRA+NQALGR +RHR D+GA++LVD RF N   R    L  W R+ I+  +S+ E  ++ L QF
Sbjct:  703 LKDRWLYTGLWENLELVK-TVIVEP-QGGEKTDFDELLQVYYDAIKHKGNKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRKYND---HHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFGNNPNRYISGLSKWVRQQIQH-HSTFESALESLAQF 883          
BLAST of Ggra596.t1 vs. uniprot
Match: I0YMC3 (DNA helicase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMC3_COCSC)

HSP 1 Score: 161 bits (407), Expect = 3.690e-42
Identity = 76/185 (41.08%), Postives = 120/185 (64.86%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNKRVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQ 185
            +  RW+V+G W +LQ  K +V  EP   G+ FD +++ +  +     GA+ FA+CRGK+SEG+DF D+ +R VI+VGIPFP ++D  VN K+ +ND  + ++ R  L +G +WY  QA+RA+NQA+GR +RH+ DYGAI+L+D RF N      L  W R +I   + S    ++ +++F+A ++
Sbjct:  552 LMERWKVTGVWAQLQQTKAIVC-EPRGTGDAFDAVMSDFYTAIREGRGAIFFAICRGKVSEGLDFTDKNARAVIVVGIPFPNVKDTKVNLKKKYNDAGQRDRSR-SLLTGDQWYSQQAFRALNQAVGRCIRHKLDYGAIVLLDRRFSNTANQRHLSRWVRTSIN-VHESFAPALESMKEFFARLE 733          
BLAST of Ggra596.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI00048D62BE (LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI00048D62BE)

HSP 1 Score: 160 bits (406), Expect = 4.890e-42
Identity = 88/195 (45.13%), Postives = 125/195 (64.10%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGE--DFDNIVNAYQ---RSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNK--RVCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKI 188
            ++ RW  +G W  L+ +K  V++EP Q GE  DFD ++  Y    +  G + GALL AVCRGK+SEG+DF D+ +R VI +GIPFP ++D+ V  KR +ND   H  K   L  G +WYE+QAYRA+NQALGR +RH+ D+GA++LVD RF N   R    LP W R+ I+  +S+ E  ++ L +F    Q++I
Sbjct:  712 LKERWLYTGLWHNLELVK-TVIVEP-QXGEKTDFDELLQLYYDAIKYKGGKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKREYND---HHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFGNNPSRYISGLPKWVRQQIQH-HSTFESALESLAEFSKKHQKEI 900          
BLAST of Ggra596.t1 vs. uniprot
Match: Fanconi anemia group J protein n=1 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B34B98C (Fanconi anemia group J protein n=1 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B34B98C)

HSP 1 Score: 160 bits (405), Expect = 6.600e-42
Identity = 88/187 (47.06%), Postives = 122/187 (65.24%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGE--DFDNIVNAYQ---RSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNK--RVCGQLPGWTREAIRGTNSSHEDIVQGLQQF 180
            ++ RW  +G WE L+ +K  V++EP Q GE  DFD ++  Y    +  G++ GALL AVCRGK+SEG+DF D+ +R VI +GIPFP ++D+ V  KR +ND   H  K   L  G +WYE+QAYRA+NQALGR +RHR D+GA++LVD RF +   R    L  W R+ I+  +SS E  ++ L QF
Sbjct:  711 LKDRWLYTGLWENLELVK-TVIVEP-QGGEKTDFDELLQVYYDAIKHKGNKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRKYND---HHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFGSNPDRYISGLSKWVRQQIQH-HSSFESALESLAQF 891          
BLAST of Ggra596.t1 vs. uniprot
Match: Fanconi anemia group J protein n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E87A2 (Fanconi anemia group J protein n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E87A2)

HSP 1 Score: 160 bits (405), Expect = 6.710e-42
Identity = 79/169 (46.75%), Postives = 115/169 (68.05%), Query Frame = 0
Query:    1 MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQ---RSSGSEHGALLFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRHEKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRN--KRVCGQLPGWTREAIR 164
            +Q RW ++G W++L+ +K VV+        DFD ++ +Y    +  GS+ GALL AVCRGK+SEG+DF D+ +R V+ +GIPFP +RD+ V  KR +ND+  H + R  L  G +WYE+QA+RA+NQALGR +RHR D+GA++LVD RFR+  K+    L  W R+ I+
Sbjct:  709 LQSRWMLTGLWDKLEEVKAVVVEAKGGDKSDFDGLLQSYYNVIKDRGSKGGALLVAVCRGKVSEGLDFTDDNARAVVTIGIPFPNVRDLQVELKRKYNDQ--HSRTR-GLLPGSQWYEIQAFRALNQALGRCIRHRNDWGALILVDDRFRSNAKKYISGLSKWIRQQIQ 874          
The following BLAST results are available for this feature:
BLAST of Ggra596.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWU61.770e-9472.08Regulator of telomere elongation helicase 1-like n... [more]
R7Q4V32.650e-8267.20Helicase ATP-binding domain-containing protein n=1... [more]
A0A444SP572.060e-4343.54Fanconi anemia group J protein-like (Fragment) n=1... [more]
A0A6D2I1R05.510e-4343.09Helicase ATP-binding domain-containing protein n=2... [more]
A0A8C6W4173.560e-4244.12BRCA1 interacting protein C-terminal helicase 1 n=... [more]
LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Ochotona princeps TaxID=9978 RepID=UPI00032B08693.580e-4247.06LOW QUALITY PROTEIN: Fanconi anemia group J protei... [more]
I0YMC33.690e-4241.08DNA helicase n=1 Tax=Coccomyxa subellipsoidea (str... [more]
LOW QUALITY PROTEIN: Fanconi anemia group J protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI00048D62BE4.890e-4245.13LOW QUALITY PROTEIN: Fanconi anemia group J protei... [more]
Fanconi anemia group J protein n=1 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B34B98C6.600e-4247.06Fanconi anemia group J protein n=1 Tax=Ochotona cu... [more]
Fanconi anemia group J protein n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E87A26.710e-4246.75Fanconi anemia group J protein n=1 Tax=Carcharodon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 1..148
e-value: 2.5E-38
score: 143.4
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 6..161
e-value: 4.7E-44
score: 150.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 3..165
e-value: 1.2E-44
score: 154.3
NoneNo IPR availablePANTHERPTHR11472:SF47FANCONI ANEMIA GROUP J PROTEINcoord: 2..198
IPR045028Helicase superfamily 1/2, DinG/Rad3-likePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 2..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:41721..42332 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra596.t1Ggra596.t1Gracilaria gracilis GNS1m malemRNAtig00000203_pilon 41721..42332 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra596.t1 ID=Ggra596.t1|Name=Ggra596.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MQRRWQVSGAWERLQNIKGVVLIEPNQRGEDFDNIVNAYQRSSGSEHGAL
LFAVCRGKLSEGIDFRDETSRGVILVGIPFPYIRDVVVNRKRAWNDRTRH
EKKRMELQSGGEWYEMQAYRAMNQALGRALRHRYDYGAILLVDCRFRNKR
VCGQLPGWTREAIRGTNSSHEDIVQGLQQFYATVQEKIAELAEDDQKHQT
TWV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C
IPR027417P-loop_NTPase
IPR045028DinG/Rad3-like