Ggra5902.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5902.t1
Unique Name	Ggra5902.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	197

Homology

[Close]

BLAST of Ggra5902.t1 vs. uniprot
Match: R7QHH3 (Mediator of RNA polymerase II transcription subunit 30 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHH3_CHOCR)

HSP 1 Score: 73.2 bits (178), Expect = 1.540e-12
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 0

Query:   44 DLKLLVHNARLELDAILATLKQVLTFV-ANGEHDAER--TERSTRTANGPSAQATVSNENRSLEP--------VMQRFQSLRTAVANAVAVHAAMVASAEQEEKLVTSQQRAALVEQKRCLVDEIRVKNDKIKLLIDELRDLHRDIAVLVSTY 185
            DL   VH AR EL A++  L +V   V ANG    ER  + +    A        +   + S+ P         M  F  LR AV+ A  ++A  +  A+Q E  V+ +++ ALVE++  LV+++  KN K+K+LID LR+LHRDI  L++ Y
Sbjct:   46 DLARAVHFARQELGAVITALMRVFLAVEANGGPPLERLASVQGLSEAQKKERAEALLKRSESVTPRKLAALGVAMPSFDGLRKAVSAAAELNAKRMEEAKQMESQVSEEEKQALVEKRAQLVEQVAAKNKKVKILIDHLRELHRDIVALLAPY 198

The following BLAST results are available for this feature:

BLAST of Ggra5902.t1 vs. uniprot

BLAST of Ggra5902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QHH3	1.540e-12	35.29	Mediator of RNA polymerase II transcription subuni...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:468706..469352 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5902.t1	Ggra5902.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000068_pilon 468706..469352 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5902.t1 ID=Ggra5902.t1|Name=Ggra5902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MQQSSMQQSSMQQSSMQQSSMQQSSMQQSSAQQSSMQQSSQQPDLKLLVH
NARLELDAILATLKQVLTFVANGEHDAERTERSTRTANGPSAQATVSNEN
RSLEPVMQRFQSLRTAVANAVAVHAAMVASAEQEEKLVTSQQRAALVEQK
RCLVDEIRVKNDKIKLLIDELRDLHRDIAVLVSTYFHAAPTTRQKK*