Ggra5854.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5854.t1
Unique NameGgra5854.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Homology
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A2V3IDG7 (Mitochondrial import inner membrane translocase subunit tim23 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDG7_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 2.390e-68
Identity = 140/278 (50.36%), Postives = 173/278 (62.23%), Query Frame = 0
Query:    1 MSWLWSSAPPDGGDDDTRSARDVDVDYSRLHADPYATPAARG--AAED--QFGDAFDDSGAPSSFDASASTAAPLDASFDLYAAPPPSTSSEP-FDFGRVSRIDPAILSARAGARSAMMGGGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGAVYSSRRGWYGERMQGML 273
            MSW WSS PP    +   SA +    ++ L +DPYA P  +   A+ D  Q  D  D                             P+ S+EP  DF R+  IDP IL  R+  RS +         +YVFA+DYAATRKK WGEQLTYLAG SYL GA VGG  GLR ALAES+G+  RLRLNA+LNG+G+R ALLAN+AGVLALAFS++ES +Y Y  +DDA NYA AG  AGA+F+ST G + A ++ L GA VA+GAVY+SRRG YG+RM+GML
Sbjct:    1 MSWFWSSPPPXXXXEPLESASEASSGHASLFSDPYADPYRQQLPASHDFTQHADPNDAFXXXXXXXXXXXXXXXXXXXXXXXXXXXPNGSAEPALDFSRLRSIDPTILQPRSAPRSPV---------DYVFADDYAATRKKAWGEQLTYLAGGSYLTGACVGGALGLRAALAESAGKSSRLRLNAVLNGVGRRAALLANTAGVLALAFSISESAIYNYTCQDDAVNYAAAGALAGALFKSTRGPKVAGLAALGGAAVALGAVYASRRGVYGQRMRGML 269          
BLAST of Ggra5854.t1 vs. uniprot
Match: R7QGL9 (Uncharacterized protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QGL9_CHOCR)

HSP 1 Score: 193 bits (491), Expect = 1.770e-57
Identity = 134/275 (48.73%), Postives = 172/275 (62.55%), Query Frame = 0
Query:    1 MSWLWSSAPPDGGDDDTRSARDVDVDYSRLHADPYATPAARGAAEDQFGDAFDDSGAPS-SFDASASTAAPLDASFDLYAAPPPSTSSEP-FDFGRVSRIDPAILSARAGARSAMMGGGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGAVYSSRRGWYGERMQGML 273
            MSWLWS+APP     D  S    +     L +DPY T +    A   F D FD S  P+ SFD   STA     S D +  P PS+SS P  DFG + RI+P++LS R+  R+  +        EYVFAEDY A RKK   EQLTYLAG SYL GA +G   G  GA+ +S+G+  +LR+NA+LNG GKRGA +AN+ GVLALAF L+ES LY Y +++   NYA AG AAGA+++ST G R AA+   AGA  A+G V++SR G+YG  +QG+L
Sbjct:    1 MSWLWSTAPPS----DEASPGPAE----ELSSDPYGTGSPSDFAS-AFDDDFDASTPPADSFDIY-STAPTPSFSADAFDTPLPSSSSAPAIDFGSMGRINPSVLSPRS-LRARPL-----DDVEYVFAEDYRAFRKKSGTEQLTYLAGGSYLTGAVIGAGRGFYGAMHDSAGKAAKLRVNAVLNGTGKRGAAMANTFGVLALAFCLSESILYNYTSDETLTNYAAAGAAAGALYKSTRGPRTAAIWAAAGAATAIGTVWASREGYYGRGLQGVL 259          
BLAST of Ggra5854.t1 vs. uniprot
Match: M2XSI8 (Mitochondrial protein translocase, MPT family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSI8_GALSU)

HSP 1 Score: 140 bits (353), Expect = 2.740e-37
Identity = 86/187 (45.99%), Postives = 115/187 (61.50%), Query Frame = 0
Query:   87 SEPFDFGRVSRIDPAILSARAGARSAMMGGGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGAVYSSRRGWYGERMQGML 273
            S   DFG + RI+P  ++   G  +     G G+  EY+FAEDY   RKK WGEQL Y  G SYL GA  GG YG    L  S G+ ++LR+NAILN  G+RGA LAN+ G+LAL FS  ES    Y  +D   NYALAG +AG +++STAG + A++      LV V  +Y++R+G YG R+Q ++
Sbjct:   38 SPTLDFGHLDRINPLTIAPALGVYAP----GYGNSPEYLFAEDYTDYRKKSWGEQLMYWTGVSYLSGAVTGGSYGCIEGLRSSGGKSWKLRVNAILNASGRRGAALANACGILALMFSGFESIYDHYIGDDAVYNYALAGISAGLVYKSTAGLKPASIYSTGLGLVGVLGIYAARQGIYGRRLQTLV 220          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A6T6AMN2 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6AMN2_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 1.720e-33
Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 0
Query:  123 EYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGAVYSSRRGWYGERMQGML 273
            +Y+F ED+   RKK   EQ+ YL G ++L GATVGG++GL   ++ S G+ ++LR+NAILN + KRG  +++S GVLA+ FS  ES +Y Y  +D   NYA+AG A GA+F+STAG R A +  +  A V+  A+Y SRRG YG   +G+L
Sbjct:   77 DYLFKEDFEEFRKKSATEQVVYLGGVAWLTGATVGGVHGLYEGMSSSRGKSYKLRVNAILNAVSKRGGAMSSSLGVLAIMFSAFESLMYHYTRDDQLLNYAVAGAATGALFKSTAGRRLAVLWAVGAAGVSTAAIYGSRRGIYGRWARGLL 227          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A7S0G7H9 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7H9_9RHOD)

HSP 1 Score: 107 bits (266), Expect = 2.250e-25
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 0
Query:  116 GGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDA-ANYALAGGAAGAMFRST 236
            GG     +Y+FA+++   RKK WG+Q+ Y AG S++ G   GGL G+   L +SSG+  RLR+N++LN +GKRG L+AN+AGV+AL  S  ES  Y +  +D++ ANYA+AG A G +F+ST
Sbjct:   10 GGREKNVDYLFADEFLDYRKKTWGQQMMYWAGTSWILGGAFGGLQGVVEGLKQSSGKSMRLRINSLLNSVGKRGLLIANTAGVIALMLSSFESFSYHFITQDESPANYAIAGAATGLLFKST 131          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A7V5I3I6 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I3I6_9BACT)

HSP 1 Score: 112 bits (280), Expect = 5.720e-25
Identity = 81/211 (38.39%), Postives = 114/211 (54.03%), Query Frame = 0
Query:   91 DFGRVSRIDPAILSARAGARSAMMGGGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESS--------------GRP-------------FRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNE-DDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGAVYSSRRGWYGERMQGML 273
            DF  + RI    ++   G  +   G  G    +Y+FAE+Y   R K WGEQLT+ AG SYLGGA +GG  G R  + + +              G P              +LRLNA+LN +G+RG  + N+AGVLA+ FS  ES L+  R++ DD+ NY  AG   GA+++STAG RA +M     A V +  +Y +RRG YG R++ +L
Sbjct:  204 DFSNLDRIQAETVAPALGIYATPRGKSGE--VDYLFAEEYHEYRHKSWGEQLTFWAGVSYLGGAIIGGSLGFREGIQKGNEMVAELVSPVTGAGGGPKAATSLSVSHVSKAKLRLNALLNAVGRRGGRMGNAAGVLAIMFSGFESFLHWLRDDVDDSWNYIGAGALTGALYKSTAGLRAVSMWSAGLATVGLVGLYGARRGVYGRRLRQLL 412          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A197KEU6 (Tim17-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KEU6_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 6.340e-20
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = 0
Query:  113 MMGGGGGSGAEYVFAEDYAATR-----------KKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGALVAVGA 256
            + G GG  G +Y+  ED A +             +GW + LTY  G +Y+ G T+GG YG    L  S    F++R+N +LNGM +RG  + NSAGVLAL ++    G+   R   D  N  LAGG  GA+F+STAG RAA   G AG + AV A
Sbjct:   42 LAGLGGTGGLDYLNLEDDAGSLPGARSGGGILPSRGWSDDLTYGTGLTYITGLTLGGAYGFFEGLRSSPSPAFKIRINTVLNGMTRRGPFIGNSAGVLALMYNGINGGIGRARGHYDPLNSVLAGGLTGAVFKSTAGLRAA---GSAGGVCAVAA 193          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A7S3AHN0 (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AHN0_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-18
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query:  123 EYVFAEDYAATRKKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLA-GALVAVGAVYSSR 261
            +++F E+Y  + ++ WGE+LT+  G SYL G T GG YGL   L  + G    +R+N++LN MG+RG    N+ G +A+ +S  E+   + R EDD  N A A    G +++STAG R AA +GL   A  A GA+ S +
Sbjct:   40 DFLFPENYEESYRRSWGERLTFHIGASYLAGLTTGGAYGLYEGLKNTQGDRRSIRINSVLNCMGRRGPGWGNALGCVAMMWSTFETIALSARGEDDLLNPAGAAALTGIIYKSTAGPRVAAAAGLGVSAFAAAGALISKQ 179          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A167ZXZ4 (Mitochondrial import inner membrane translocase subunit tim23 n=1 Tax=Moelleriella libera RCEF 2490 TaxID=1081109 RepID=A0A167ZXZ4_9HYPO)

HSP 1 Score: 90.5 bits (223), Expect = 4.770e-18
Identity = 59/145 (40.69%), Postives = 90/145 (62.07%), Query Frame = 0
Query:  123 EYVFAEDYAATR---------KKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSG-LAGALVAVGAV 257
            EY+  ED A +           +G+ + L Y  G +YL   ++GG +GL+  L +S+G+P +LR+NAILNGM +RG  L NSAGV+A+ ++ A S L + R + DAAN  +AG  +G +F+ST G R+  +SG + G++  V AV
Sbjct:   75 EYLTLEDSALSELPGGQSVLPSRGFTDDLCYGTGITYLTALSIGGAWGLKDGLQKSAGQPPKLRMNAILNGMTRRGPFLGNSAGVVAIVYNCANSLLGSLRGKHDAANTVVAGVLSGMVFKSTRGVRSMMISGGVVGSIAGVWAV 219          
BLAST of Ggra5854.t1 vs. uniprot
Match: A0A1B5KVX9 (Uncharacterized protein n=1 Tax=Ustilaginoidea virens TaxID=1159556 RepID=A0A1B5KVX9_USTVR)

HSP 1 Score: 88.6 bits (218), Expect = 2.760e-17
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 0
Query:  123 EYVFAEDYAATR---------KKGWGEQLTYLAGCSYLGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLALAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSG 246
            EY+  ED A +           +G+ + L Y  G +YL   ++GG +GL+  L +S G+P +LR+NAILNGM +RG  L NSAGV+A+ ++   S + + R + DAAN  +AG  +G +F+ST GAR+  +SG
Sbjct:   81 EYLSLEDSALSELPGGQSVLPSRGFTDDLCYGTGITYLAALSIGGAWGLKDGLQKSVGQPPKLRMNAILNGMTRRGPFLGNSAGVVAIVYNCVNSLIGSLRGKHDAANSVVAGVLSGMVFKSTRGARSMMISG 213          
The following BLAST results are available for this feature:
BLAST of Ggra5854.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDG72.390e-6850.36Mitochondrial import inner membrane translocase su... [more]
R7QGL91.770e-5748.73Uncharacterized protein n=2 Tax=Chondrus crispus T... [more]
M2XSI82.740e-3745.99Mitochondrial protein translocase, MPT family n=1 ... [more]
A0A6T6AMN21.720e-3347.68Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0G7H92.250e-2547.54Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7V5I3I65.720e-2538.39Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A197KEU66.340e-2041.29Tim17-domain-containing protein n=1 Tax=Linnemanni... [more]
A0A7S3AHN01.020e-1840.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A167ZXZ44.770e-1840.69Mitochondrial import inner membrane translocase su... [more]
A0A1B5KVX92.760e-1740.60Uncharacterized protein n=1 Tax=Ustilaginoidea vir... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 144..253
e-value: 2.7E-17
score: 63.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..29
NoneNo IPR availablePANTHERPTHR15371:SF0MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-RELATEDcoord: 121..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 241..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..206
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..188
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 260..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 207..240
NoneNo IPR availableTMHMMTMhelixcoord: 237..259
IPR045238Tim23-likePANTHERPTHR15371TIM23coord: 121..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:154391..155212 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5854.t1Ggra5854.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 154391..155212 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5854.t1 ID=Ggra5854.t1|Name=Ggra5854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MSWLWSSAPPDGGDDDTRSARDVDVDYSRLHADPYATPAARGAAEDQFGD
AFDDSGAPSSFDASASTAAPLDASFDLYAAPPPSTSSEPFDFGRVSRIDP
AILSARAGARSAMMGGGGGSGAEYVFAEDYAATRKKGWGEQLTYLAGCSY
LGGATVGGLYGLRGALAESSGRPFRLRLNAILNGMGKRGALLANSAGVLA
LAFSLAESGLYTYRNEDDAANYALAGGAAGAMFRSTAGARAAAMSGLAGA
LVAVGAVYSSRRGWYGERMQGML*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045238Tim23-like