Ggra5831.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5831.t1
Unique Name	Ggra5831.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	198

Homology

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BLAST of Ggra5831.t1 vs. uniprot
Match: A0A2V3IK44 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK44_9FLOR)

HSP 1 Score: 167 bits (424), Expect = 8.730e-49
Identity = 90/204 (44.12%), Postives = 129/204 (63.24%), Query Frame = 0

Query:    1 MLKNYATMVKGDECISFYATGKCSRICTYSLKSLINRNSWSKCSQRCDWSSAIVDGAKSWLDMCLANPAPDVFDSEEDTKASAKNDMGNDSSRIVAGNAKDSMAKKSVGSRSS----IIIPCLMMLAIAAAIVLSIRPGLRGKIRRTLIMFRGRLRRMKEKWYSR---TTTGKGPLDLGSDMKELRTLQRGARRHLKSLRSTLD 197
            ML+ YA++VKG+ C+SFY +GKC RIC++SL S++ R+SW++C++RCDWS A ++ A SWL MC  N AP+         A + + + NDS       + D  + +    R S    +++P  M+LAI +A+  S+ P L  + +R  I FR  L R ++  ++R   T  GKGPLD+G D  ELR LQRGARRHLKSL+STLD
Sbjct:   42 MLQTYASLVKGEGCVSFYTSGKCPRICSFSLNSILTRSSWTRCARRCDWSPAFIESAHSWLRMCNHNLAPE-------QPAMSHHQLSNDSLHHTLHASGDDASSRIAPLRPSSIIRVVVPLTMLLAIVSALACSLSPALNARFQRIAITFRATLHRCRQALHNRRGTTPVGKGPLDIGPDRSELRNLQRGARRHLKSLQSTLD 238

The following BLAST results are available for this feature:

BLAST of Ggra5831.t1 vs. uniprot

BLAST of Ggra5831.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IK44	8.730e-49	44.12	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 189..197
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 114..132
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 133..197
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..113
None	No IPR available	TMHMM	TMhelix		coord: 108..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:418911..419504 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5831.t1	Ggra5831.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000935_pilon 418911..419504 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5831.t1 ID=Ggra5831.t1|Name=Ggra5831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MLKNYATMVKGDECISFYATGKCSRICTYSLKSLINRNSWSKCSQRCDWS
SAIVDGAKSWLDMCLANPAPDVFDSEEDTKASAKNDMGNDSSRIVAGNAK
DSMAKKSVGSRSSIIIPCLMMLAIAAAIVLSIRPGLRGKIRRTLIMFRGR
LRRMKEKWYSRTTTGKGPLDLGSDMKELRTLQRGARRHLKSLRSTLD*