Ggra5823.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5823.t1
Unique NameGgra5823.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length432
Homology
BLAST of Ggra5823.t1 vs. uniprot
Match: A0A2V3ISY8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISY8_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 1.290e-113
Identity = 182/412 (44.17%), Postives = 261/412 (63.35%), Query Frame = 0
Query:    1 MIWNTLRARELGKSVSKDLVWRAELNTLSHLHVQPTWKTDFRPVTHGCRDYIVQLSASQDQALLATASSNGTVEIHEPDDYTDSLRLKLSSNHSSRVAAFDWGKGSGDHLYVAHEAGTIHVFDLNRYTNAPSN-VISELGSMRFLTDVITLEENLIAVAHDELLHIYDRRQGWKRKHGTTTRIGKEIAVAAEGLELYIASPGNISLYDRRQLPQKRPLLSMERKSTNIILKRQLPEHSRLDMLRILSGAPRGFLFYRTAKGTTGYIDMVGKAGEHITTTH----PPVIGESSQVSLGETGLQSYGTVRRSYDL------------SWHVRKRVGDVVCASHGTGWRAIFPQTFRSSFEVVLFGHGRPMEIYERALENEVACVHAVGRKLNRIALGGVRNEMQMLQLDCSSGP 395
            M    L+ARELG+ +S  +  R EL  L+HL +Q  W T F P+T   RDYIVQ+S SQD ALLA ASSNG +EIHEP+D +DS+RL L S+  SR+AA  + +   D + VAHE G +H++DLN   N+ +     +  + R ++D+++L++N+ AVA D+ + +YD R          TR+GK+ A   E LELY+AS G ISLYDRR+L     L+SMERK +  +L+R++ E  RL+MLR+L GAP+G LFY    GTTG++D++G   EHI  +     PP+   +      + GLQ YGT+ +S+ L            SW+VR+R+GDVV A+HG+GW AIFP  ++ +FEVVLFGHG  M+ +ER ++ + +C+  VG  L RI +GG+ N++  L +D S  P
Sbjct:    1 MALRALKARELGEPLSNKVTLRIELKCLAHLRMQNKWTTRFVPITPATRDYIVQVSPSQDGALLAVASSNGRIEIHEPED-SDSMRLSLFSSAWSRIAACTFSRSPHDTILVAHENGNVHLYDLNTCENSTATRAFKQEAAKRHVSDILSLDKNVFAVARDDFVFLYDSRLRSSAACTAQTRVGKDAAFVGEDLELYVASQGVISLYDRRRLRAPSKLISMERKESPCVLRREISESGRLNMLRMLPGAPQGHLFYHAVNGTTGHVDILGSGQEHIKVSRQVERPPLPAPNPD----DPGLQEYGTLEQSFSLQIXXXXXXSLEPSWYVRRRLGDVVRAAHGSGWIAIFPHLYKPAFEVVLFGHGSAMQSFEREMDYQASCMQTVGGTLRRIVVGGIDNQVDTLAVDTSRRP 407          
BLAST of Ggra5823.t1 vs. uniprot
Match: R7QSJ7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ7_CHOCR)

HSP 1 Score: 129 bits (325), Expect = 1.040e-29
Identity = 121/422 (28.67%), Postives = 184/422 (43.60%), Query Frame = 0
Query:   11 LGKSVSKDLVWRAELNTLSHLH-----VQPTWKTDFRPVTHGCRD----YIVQLSASQDQALLATASSNGTVEIHEPDDYT-DSLRLKLSSNHSS------RVAAFDWGKGSG-DHLYVAHE-AGTIHVFDLNRYTNAPSNVISELGSMRF--------LTDVITLEENLIAVA-HDELLHIYDRRQGWKRKHGTTT--RIGKEIAVAAEGLELYIASPGNISLYDRRQLPQKRPL--------------LSMERKSTNIILKRQLPEHSRLDMLRILSGAPRGFLFYRTAKGTTGYIDMVGK--AGEHI-----TTTHPPVIGESSQVSLGETGLQSYGTVRRSYDLSWHVRKRVGDVVCASHGTGWRAIFPQTFRSSFEVVLFGHG---RPMEIYERALENEVACVHAVGRKLNRIALGG 379
            LG  VS+   WRA+L +L  L      +QPT    F     G  +    +I QLS S D  LLA ASS+  VE+HEP D T +SLRL L   H        + +   W   +G + + +A E    + +FDL   +         L S           ++DV  +++   AV+ +  ++ +YD R   ++  G  T    G+   +  +G+ +Y +   +I ++DRR L   RP+                 E++  ++ +     E  R   L+ L GA  G + Y+T+ G  G++DM     A EHI     T   P  I         ETGL  YGT        WHVR+R  DV     G GWR + P    +   V+ FG G   R M ++ +      +CVHA+  + ++  LGG
Sbjct:   21 LGGDVSESFCWRAQLASLRCLQPSSNGLQPT---SFTATARGAWEKRHRHIAQLSPSPDGGLLAVASSDAVVEVHEPGDRTGESLRLTLEPVHDRMPRTNLKFSGAAWLAPAGAESVVMAFENLPQMWLFDLQTCSLDRPTTKIRLASTTTQRNSIDAGVSDVARVDDYCFAVSLYSGMIQVYDVRASHRKNDGIATLCATGRFSVIDTQGMYIYRSGGDSIHMHDRRML---RPIQVGSIKSFGGRHSSAGGEQEVASVTIGND--EDRRPSFLKALPGAAPGCVMYQTSGGAVGHVDMAASKHALEHIPEESITLKRPRPI---------ETGLDEYGTASEMMHQPWHVRRRHCDVKVGPLGQGWRVVAPIAHGAGVRVITFGPGVKTRSMRLWRKGY---YSCVHAINSQFDKFILGG 422          
The following BLAST results are available for this feature:
BLAST of Ggra5823.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISY81.290e-11344.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QSJ71.040e-2928.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 82..123
e-value: 2.1
score: 15.0
coord: 38..77
e-value: 11.0
score: 10.5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 43..247
e-value: 2.4E-14
score: 55.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..431
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 41..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:398373..399668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5823.t1Ggra5823.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 398373..399668 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5823.t1 ID=Ggra5823.t1|Name=Ggra5823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MIWNTLRARELGKSVSKDLVWRAELNTLSHLHVQPTWKTDFRPVTHGCRD
YIVQLSASQDQALLATASSNGTVEIHEPDDYTDSLRLKLSSNHSSRVAAF
DWGKGSGDHLYVAHEAGTIHVFDLNRYTNAPSNVISELGSMRFLTDVITL
EENLIAVAHDELLHIYDRRQGWKRKHGTTTRIGKEIAVAAEGLELYIASP
GNISLYDRRQLPQKRPLLSMERKSTNIILKRQLPEHSRLDMLRILSGAPR
GFLFYRTAKGTTGYIDMVGKAGEHITTTHPPVIGESSQVSLGETGLQSYG
TVRRSYDLSWHVRKRVGDVVCASHGTGWRAIFPQTFRSSFEVVLFGHGRP
MEIYERALENEVACVHAVGRKLNRIALGGVRNEMQMLQLDCSSGPIPLHN
PRGTEKKAPPRTWWSRCPDMNDSDISQASAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf