Ggra5795.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5795.t1
Unique NameGgra5795.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Homology
BLAST of Ggra5795.t1 vs. uniprot
Match: A0A2V3IJZ8 (Porphobilinogen synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJZ8_9FLOR)

HSP 1 Score: 94.0 bits (232), Expect = 8.210e-18
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 0
Query:   65 IESARMSDTADECFNPHLLIPAVVSEINSKFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCR 147
            I  +  S+TADEC+NP  LIP  +S I +K+P+VS+ T VALD  SDQ HD +VSS  LG+GGKG ILN ETV+QL  Q  C+
Sbjct:  143 IPDSLKSNTADECYNPDGLIPRAISSIKAKYPNVSVWTDVALDPYSDQGHDGVVSSDNLGDGGKGRILNDETVEQLCRQALCQ 225          
BLAST of Ggra5795.t1 vs. uniprot
Match: A0A7S3ELZ0 (Porphobilinogen synthase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELZ0_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 8.230e-18
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   71 SDTADECFNPHLLIPAVVSEINSKFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCR 147
            S+TADEC+NP  L+P +VS +   FPD+S+ T VALD  SDQ HD IVSS   G+GGKG ILN ET++QL  Q  C+
Sbjct:   71 SNTADECYNPDGLVPQLVSRLKHSFPDISVWTDVALDPYSDQGHDGIVSSDNRGDGGKGRILNDETIEQLCRQSICQ 147          
BLAST of Ggra5795.t1 vs. uniprot
Match: A0A7S3A6E2 (Porphobilinogen synthase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A6E2_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-16
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   71 SDTADECFNPHLLIPAVVSEINSKFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCR 147
            S+TADEC+NP  L+P +VS +   FPD+S+ T VALD  SDQ HD IVSS   G+GGKG ILN ET++QL  Q  C+
Sbjct:  154 SNTADECYNPDGLVPQLVSRLKHSFPDISVWTDVALDPYSDQGHDGIVSSDNRGDGGKGRILNDETIEQLCRQSICQ 230          
BLAST of Ggra5795.t1 vs. uniprot
Match: A0A7S3ELX6 (Delta-aminolevulinic acid dehydratase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELX6_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 2.490e-16
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   71 SDTADECFNPHLLIPAVVSEINSKFPDVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCR 147
            S+TADEC+NP  L+P +VS +   FPD+S+ T VALD  SDQ HD IVSS   G+GGKG ILN ET++QL  Q  C+
Sbjct:  154 SNTADECYNPDGLVPQLVSRLKHSFPDISVWTDVALDPYSDQGHDGIVSSDNRGDGGKGRILNDETIEQLCRQSICQ 230          
BLAST of Ggra5795.t1 vs. uniprot
Match: L1K026 (Delta-aminolevulinic acid dehydratase n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1K026_GUITC)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-12
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0
Query:   71 SDTADECFNPHLLIPAVVSEINSKFP-DVSLRTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCRTARVQA 153
            S++ADEC+NP   IP+++S+I  K+   V++ T VALD  SDQ HD +VS+   G+GGKG ILN ETV+QL     CR A  QA
Sbjct:  161 SNSADECYNPEGFIPSLISKIKGKYGGSVNVWTDVALDPYSDQGHDGMVSTDKRGDGGKGRILNDETVEQL-----CRQALAQA 239          
BLAST of Ggra5795.t1 vs. uniprot
Match: A0A2V3IWP5 (Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWP5_9FLOR)

HSP 1 Score: 77.0 bits (188), Expect = 1.040e-11
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 0
Query:  161 PATNSSGQLHPL-----PQAFSTIPPQRTTLLLALAQQRLGQTAAQPLDPSQ-VAKHQTAPNTQPSASPTMPIQDMLAPLQFTVPAKYLDSCLAL 249
            P  N S   H +     PQ+F+  PPQ T LLLA AQQ LGQT+AQPLDPS+     Q  P  Q SA P M + ++LAP+QFTVP   LDS +A+
Sbjct:  320 PGPNPSIAQHGVMDRYTPQSFANHPPQPTALLLAPAQQPLGQTSAQPLDPSEDFTMQQLVPAAQVSAPPIMAMPEILAPVQFTVPVDMLDSYMAV 414          
The following BLAST results are available for this feature:
BLAST of Ggra5795.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IJZ88.210e-1856.63Porphobilinogen synthase n=1 Tax=Gracilariopsis ch... [more]
A0A7S3ELZ08.230e-1857.14Porphobilinogen synthase n=1 Tax=Rhodosorus marinu... [more]
A0A7S3A6E21.090e-1657.14Porphobilinogen synthase n=2 Tax=Rhodosorus marinu... [more]
A0A7S3ELX62.490e-1657.14Delta-aminolevulinic acid dehydratase n=2 Tax=Rhod... [more]
L1K0265.400e-1251.19Delta-aminolevulinic acid dehydratase n=2 Tax=Gemi... [more]
A0A2V3IWP51.040e-1150.53Putative UDP-N-acetylglucosamine--peptide N-acetyl... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70Aldolase class Icoord: 36..165
e-value: 4.0E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..224
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:313913..319521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5795.t1Ggra5795.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 313913..319521 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5795.t1 ID=Ggra5795.t1|Name=Ggra5795.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MVSAAFISAPFVSATPFYGDALRPACHPGHADCGATTPSRRAAVRAASAT
DHAVVRDALPGLRVIESARMSDTADECFNPHLLIPAVVSEINSKFPDVSL
RTVVALDACSDQRHDDIVSSHTLGEGGKGTILNGETVKQLSGQVRCRTAR
VQAWFIWLICPATNSSGQLHPLPQAFSTIPPQRTTLLLALAQQRLGQTAA
QPLDPSQVAKHQTAPNTQPSASPTMPIQDMLAPLQFTVPAKYLDSCLALI
FVVAYPNVTARMPSPHNAPAAMVSAAFISAPFVSATPFYGDALRPACHPG
HADCGATTPSRRAAVRAASATDHAVVRDALPGLRVIESARM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM