Ggra5763.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5763.t1
Unique NameGgra5763.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length971
Homology
BLAST of Ggra5763.t1 vs. uniprot
Match: A0A2V3IP81 (E3 ubiquitin-protein ligase UPL1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP81_9FLOR)

HSP 1 Score: 821 bits (2120), Expect = 3.750e-265
Identity = 521/1080 (48.24%), Postives = 686/1080 (63.52%), Query Frame = 0
Query:    1 MRMLYPVTKENPDPLSVFRQDDSASADFVALIHKASQMAKDLCKRDDFDAIDTNESGDNNSRAEL-VADIRIRNTPSPDPSIPEALTEMGFPERLARVAIRRTALGGVEHATEWLVQLLDAEDDSIPSDEERNWDGDEQGSGDEPVRERNSNPEDEEDEPPQSGEGLDSDSNALQLIDDALPVPHTPIDEIMIDAGSADPADDSENDNSNGDSSPVPSLSSRDNDDEPRREVGQKSEQTASKVKFVTHSVDQDSSDLLKSSIQKDIQLLRVGLQQSSDIKAQEISEIVKFAGKSIAECVSNADHENGLDSEALKIAPVSVDIFKNVKQDVFESLLEVIKNIVHHAQSVKKNVSFLCVEILSALQKDGTLLKQRLDDVARLMKEGLMMSFKVT--QNTYAVSRVATLWAHYGGYRGRQSLRNCEVFDLAFKTLRRPVSELETLSKDPNVDEEATQPLKQLSIKEEQSNSSGRSSGSRKRNIWNADKKK------------------HRSQHK-----------LELRLAYEFKDNIIDISKRDKESRVG--KNNKTDGEEDRMEIEDMAG-AMDRAISDAHPSKLFEDRGTQNVATEQLPDGSEDHGGDVNMSSPNGQDLIPKSKMKEIAIVNEELSRVKDLALRTKKAVVDRTKKALSEVVPEVELEQSERLQRQS---------------------------------------KAYESGIVENLLALRQLDSRSFHGSEYRVVRALVKTILRHIVEDPRTLQEAIVTEIQTVIDQPRGRSPNTVKSLLTASAPL----------------------------------------------RPNVKEVIWGLADLLGPKGNKDTSSTKNLVSSATLNRNQELSQFALETLADLIQLFQIAAVAFLSAKSPSPAVQGSALDYVVQACLTSELSSNFVPRSLSELVSPS-ESMESPAQRLLHALCSKSANTHGEAVHALAAAAKIEADKEVVDLDAISGIASCITSGTKLRVLGAMLSTSLPNDIARSLKKMDTSVSKHFEVTKSVLKALAWLGQVAGNIAKSGDSGNDVMSLPNTGSRPW 959
            +RM++PVTK  P+ LSV RQDDSASADFVAL+H AS +AKD+CK +  DA + N + D+NSR ++   D+  R+TPSPDPSI   LTEMGF ER+AR+AIRRTA GGVEHATEWL+  +D + DS  SD+ERNW+ D+QG                      S + +D  +   Q+I D L  P TP DE+M+D+GSA P D SEN+NSN  SSP  SL S+D+D+E      Q    T+SK K ++ +VD D  DLL+ S++ DI LLR GL+QS+ ++AQEISEI++    SI+E   + + E+ +++E+LKI PV ++ FK++KQ +F+SL+EVI+ IV +A++  +++SFLCVE+LSALQKDG L  Q L+ +++L+ EGL+ +      Q+   V RVATL AHYGGYR R+ L    VF+LAFKTLRR +S+LE  S+DPNVD+EATQP+KQLSIKE+Q N + RSS SRKR       K+                   R +             L+ R  YEFKDN+I+ SKR K    G  K  K     D+M+ ED  G  ++RA+   H +K   DR  ++   E+    ++    DV+M SPNG   I ++K  ++  VN+EL+RVK +A + K+A +DRTK A+ E+VP+VE++ S+RLQ++S                                       KAYE+G V  LLAL QLD+R  HG++YR VRALVKTILRHIVEDPRTL+EA++ EI +++ QPR RS  TVK LL+ASAP+                                              RPN+KEVI  L+ LL  K  KDT  T++ VSS  LN NQ+L+QFALETLA+LIQLFQ+AAVAFLS +SPS AV GSALDYVVQ CL  E SSN+   SL+  +  + E + SP ++LL+ALCSKSANTH   V ALAAAAK+EADK VV++DA+ GIASCITSGTKLRVL A+L T L ND+ARSL KMDTSVSKHFEVT +VLKALA+LGQ + +IA +GDSGND +S  ++  R W
Sbjct: 1546 LRMVHPVTKNVPNLLSVLRQDDSASADFVALVHTASHVAKDVCKGETTDAPEPNGNDDSNSRPDMDTTDLPPRSTPSPDPSILPTLTEMGFSERMARIAIRRTAPGGVEHATEWLLAHMDGDIDSAASDDERNWERDDQGXXXXXXXXXXXXXXXXXXXXXXSDDEVDGRAIVRQMIQDVLAGPQTPTDEVMMDSGSAGPVDFSENENSNRGSSP--SLPSKDSDEESGTLTAQAGRLTSSKPKILSRTVDTDDVDLLRRSLRTDIHLLRSGLKQSTQLEAQEISEIIRVVHNSISEHQLSNEQESKMNTESLKILPVQIEAFKDIKQGMFQSLIEVIQEIVQYAKNGTEDLSFLCVELLSALQKDGALTNQSLEVISKLINEGLIHALNTNPHQDISTVGRVATLLAHYGGYRSRKCLTENGVFELAFKTLRRLISDLEDASRDPNVDQEATQPIKQLSIKEDQGNGNARSSESRKRRFVERGTKEPPAFSPRTKAGSEVPHIPSRVEEAILRWMTSCMLLLDARYRYEFKDNLIEFSKRGKILARGDEKAKKERDAGDKMDTEDTTGNGVERAV--VHLTKALGDRSRKS---EEARKDADVQPNDVDMQSPNGTQSIKQAK-NDVGDVNDELARVKAIARQHKEAAIDRTKMAIREMVPDVEVDDSQRLQKRSVLDICMECIRMWRNMKIGDTLVACLQLLASITRDWDIAKKAYEAGAVPALLALPQLDTRVAHGTDYRTVRALVKTILRHIVEDPRTLEEAMIAEIHSLVAQPRARSGFTVKYLLSASAPMMSRSMNSFVSAASHTVEAIELLAGSQLQLQEQEALRFPDMVGKLNERPNIKEVINALSHLLVSKAKKDTGPTRSFVSSVNLNSNQDLTQFALETLAELIQLFQMAAVAFLSTESPSKAVDGSALDYVVQTCLPFEASSNYELPSLAGAIPQNDELLISPTRKLLYALCSKSANTHNATVQALAAAAKVEADKAVVNVDAVRGIASCITSGTKLRVLRAILKTDLANDLARSLNKMDTSVSKHFEVTAAVLKALAFLGQASAHIAMTGDSGNDEISFSSSSHRHW 2617          
BLAST of Ggra5763.t1 vs. uniprot
Match: R7Q813 (UBA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q813_CHOCR)

HSP 1 Score: 296 bits (759), Expect = 4.020e-80
Identity = 314/1125 (27.91%), Postives = 507/1125 (45.07%), Query Frame = 0
Query:    1 MRMLYPVTKENPDPLSVFRQDDSASADFVALIHKASQMAKDLCKRDDFDAIDTNESGDNNSRAELVADIRIRNTPSPDPSIPEALTEMGFPERLARVAIRRTALGGVEHATEWLVQLLDAEDDSIPSD--EERNWDGDEQGSGDEPVR---ERNSNPEDEEDEPPQSGEGLDSDSNALQLIDDALPVPHTPI-------------------------------DEIMIDAGSADPADDSENDNSNGDSSPV---------PSLSSRDNDDEPRREVGQKSEQTASKVKFVTHSV--DQDSSDLLKSSIQKDIQLLRVGLQQSSDIKAQEISEIVKFAGKSIAECVSNADHENGLDSEALKI--APVSVDIFKNVKQDVFESLLEVIKNIVHHAQSVK--KNVSFLCVEILSALQKDGTLLKQRLDDVARLMKEGLMMSFKVTQNTYAV-----SRVATLWAHYGGYRGRQSLRNCEVFDLAFKTLRRPVSELETLSKDPNVDEEATQPLKQLSIKEEQSN-----------SSGRSSGSRKRNIWNADKKKHRSQHK-----------LELRLAYEFKDNIIDISKR----------DKESRVGKNNKTDGEEDRMEIEDMA-------GAMDRAISDAHPSKLFEDR-GTQNVATE--QLPDGSEDHGGDVNMSSPNGQDLIPKSKMKEIAIVNEELSRVKDLALRTKKAVVDR--TKKALSEVVPEVEL----EQSERLQR--------------QSKAYESGIVENLLALRQLDSRSFHGSEYRVVRALVKTILRHIVEDPRTLQEAIVTEIQTVI--DQPRGRSPNTVKSLLTASAPL---------------------------------------------------RPNVKEVIWGLADLLG----PKGNKDTSSTKNLVSSATLNRNQELSQFALETLADLIQLFQIAAVAFLSAKSPSPAVQGSALDYVVQACLT---SELSSNFVPRSLSELVSPSESMESPAQRLLHALCSKSANTHGEAVHALAAAAKIEADKEVVDLDAISGIASCITSGTKLRVLGAMLSTSLPNDIARSLKKMDTSVSKHFEVTKSVLKALAWLGQVAGNIAKSGDSGND 947
            +++L  VT    + L+ FR D SA +D + ++H  S++A ++  +     + T    ++        D      PSPDP    +L EMGFPER A  A+RRTA  G+E A EWL+  +D  DD++ SD  EE  W    Q S  E      E N NP D+      + EG   DSN                                               D  M D  +AD  D SE  +      P          P  + R       R+   +   TA + + +T +V  DQD   L++ ++  ++ LL   L++SS +   +I      A   I E  S++D  NG   + + +   P+ ++ F   K+ +FESLL+V + ++      +  ++  +L +E+LS LQK  + L++   + A L+ +GL ++ +       +      + A +W+HYGG R R++L+ C  F L ++ L R + E ET +  P VD EATQP+K LSI+E++ +           ++G S+  R  +   + +   RS+             L+  + +E  D II+  K            K+S  G   K D +E   E+ +         GAM+ + +    S++  D  GT + A E   +P   ED   D++      Q+       K + +   E+  +  L+ +T+K +     T+  LS  +  ++L    E  + L                   A +SG+   LL L QL+S     +  +V R L +TILRH++EDP +L EA+V+E++++    QPR R   ++KSL++A++P+                                                   R NVK VI  ++ LL        +++   ++   +    N   E + FALE L D ++  Q+AAVAF+   SP+  + GSALDY++Q  +    +  + N   +SL+ + S  E +   A++L  ALCSK+ANTH +AV  LA A K EADKE    + I+G+A CI  GTK RVL  +L T   ND+ARSL+++D S  K+FEV  SVL+A+  +G+ A  +A+  D   D
Sbjct:  933 LQLLTSVTSHPTELLAAFRPDGSAMSDVLGIVHTTSEVAAEMEGKKGTVPVKTRGPEEDGVPESRQFDPPPLRRPSPDPENLRSLVEMGFPERRAAYALRRTAPAGIEFAIEWLMTQMDEADDALQSDDAEEPRW----QISAAENTTDNGETNRNPNDD-----AADEG---DSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAMEDTEAAD-VDVSEQQDQGIHDEPAAPGSPNSGSPMSTGRGRSLGRSRQKPHRKPSTAKRKELLTLNVAADQDGRRLVEVALFNELALLSGALEKSSAVPDSDIPLYRSTAAGHI-EMSSSSDLLNGGKPQDMSVRTVPIPIESFIAKKKQLFESLLDVTRTVIEACDQHEHGRHFPYLAIELLSVLQKSSSWLEKGSTEFAELVHKGLRLALEQQLGDGGLRHGLSGQTAAIWSHYGGNRARRALQQCGTFRLGYECLVRSIDEWETATAVPLVDIEATQPIKYLSIEEKKQDMCDTVSKKLAKTTGESNAGRLASTKRSMRSVTRSEAVKLKQITTCLLLLDASVRFESTDKIIESCKEVEKVPKSISAGKDSEEGDQEKMDTDEKNSELANQCEDDSQDPGAMNVSEARKALSEVMRDVFGTPSSAMEIDAVPADEEDV--DLDTLHDRAQEC------KSVLVDKAEVEIMGWLSKKTEKTISSSFPTEALLSHCLSLLKLWNGVEVGDALLAVLQLLGSLTADWGLAQSAIDSGLTSELLRLPQLESHKSRSTNCKVARMLTRTILRHLIEDPESLHEAMVSELRSIFTSSQPRARVSYSMKSLISAASPMIARDLQCFLSALTKSVRTTNIRTSDSDGSQELELNDYKQLNTSEMESVLSHRSNVKSVISAISCLLSGTVLEHESREHQDSRLSATETLTNNGIERTAFALELLTDFVEFSQVAAVAFIKTPSPTSDISGSALDYIIQKFIPFPEAPETKNVSSQSLARVSSGREEVCIAARKLFLALCSKTANTHEDAVRGLARATKREADKEHACANVIAGLAQCIVPGTKFRVLRVVLETDFANDLARSLQRLDLSFEKNFEVASSVLRAITLIGRAATYMARHDDENPD 2035          
BLAST of Ggra5763.t1 vs. uniprot
Match: A0A6T6CV04 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CV04_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-6
Identity = 76/324 (23.46%), Postives = 139/324 (42.90%), Query Frame = 0
Query:  658 LDSRSFHGSEYRVVRALVKTILRHIVEDPRTLQEAIVTEIQTVIDQPR-GRSPNTVKSLLTASAPL---------------------------------------RPNVKEVIWGLADLLGPKGNKDTSSTKNLVSSATLNRNQELSQFALETLADLIQLFQIAAVAFLSAKSPSPAVQGSALDYVV--QACLTSELSSNFVPRSLSELVSPSESMESPAQRLLHALCSKSANTHGEAVHALAAAAKIEADKEVVDLDAISGIASCITSGTKLRVLGAMLSTSLPNDIARSLKKMDTSVSKHFEVTKSVLKALAWLGQVAGNIA 939
            L  +   G  +    +L++TI+RH+VEDP TL+EA+V+E++ V+   R GR  ++++S+++++  L                                       R NV  V+  L  LL    N+ T S K      T N   +   FA+ETLA+L+ L   A    L A +       SA+ Y++  +  L     S    RS + + +P          ++ ++  ++ + H +AV  L +      +  +  L  +  +  C++      VL  M+   L   +A  L ++D +  +  E+ + +L+ L  LGQV+  +A
Sbjct: 1831 LSDKILAGPAHAKCSSLLRTIIRHVVEDPDTLEEAMVSELRNVVGGVRSGRIASSIRSIVSSTINLAMRNSELYCRALVMTCRLRGSAVVSPSGDAEVQRSPPRERRNVVVVVRALLSLL----NESTISGKTDDDDETRNVVCKRVLFAVETLAELV-LISPACCDVLFASNAPDGSNRSAMRYILSLERILPLTSGSGGSDRSTALVGAP----------IVRSIIRRTDHYHVDAVKELVSFVDERLEHGMSLLPGVRTLIVCLSPAPPAHVLRTMIKHELDKKLAVYLDRIDATTLEGHELAEGILRRLEGLGQVSSKLA 2139          
The following BLAST results are available for this feature:
BLAST of Ggra5763.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IP813.750e-26548.24E3 ubiquitin-protein ligase UPL1 n=1 Tax=Gracilari... [more]
R7Q8134.020e-8027.91UBA domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A6T6CV041.350e-623.46Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.10coord: 55..130
e-value: 2.1E-8
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 455..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..585
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 76..117
score: 8.691358
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 74..116
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 285..935

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:44076..47188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5763.t1Ggra5763.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 44076..47188 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5763.t1 ID=Ggra5763.t1|Name=Ggra5763.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=971bp
MRMLYPVTKENPDPLSVFRQDDSASADFVALIHKASQMAKDLCKRDDFDA
IDTNESGDNNSRAELVADIRIRNTPSPDPSIPEALTEMGFPERLARVAIR
RTALGGVEHATEWLVQLLDAEDDSIPSDEERNWDGDEQGSGDEPVRERNS
NPEDEEDEPPQSGEGLDSDSNALQLIDDALPVPHTPIDEIMIDAGSADPA
DDSENDNSNGDSSPVPSLSSRDNDDEPRREVGQKSEQTASKVKFVTHSVD
QDSSDLLKSSIQKDIQLLRVGLQQSSDIKAQEISEIVKFAGKSIAECVSN
ADHENGLDSEALKIAPVSVDIFKNVKQDVFESLLEVIKNIVHHAQSVKKN
VSFLCVEILSALQKDGTLLKQRLDDVARLMKEGLMMSFKVTQNTYAVSRV
ATLWAHYGGYRGRQSLRNCEVFDLAFKTLRRPVSELETLSKDPNVDEEAT
QPLKQLSIKEEQSNSSGRSSGSRKRNIWNADKKKHRSQHKLELRLAYEFK
DNIIDISKRDKESRVGKNNKTDGEEDRMEIEDMAGAMDRAISDAHPSKLF
EDRGTQNVATEQLPDGSEDHGGDVNMSSPNGQDLIPKSKMKEIAIVNEEL
SRVKDLALRTKKAVVDRTKKALSEVVPEVELEQSERLQRQSKAYESGIVE
NLLALRQLDSRSFHGSEYRVVRALVKTILRHIVEDPRTLQEAIVTEIQTV
IDQPRGRSPNTVKSLLTASAPLRPNVKEVIWGLADLLGPKGNKDTSSTKN
LVSSATLNRNQELSQFALETLADLIQLFQIAAVAFLSAKSPSPAVQGSAL
DYVVQACLTSELSSNFVPRSLSELVSPSESMESPAQRLLHALCSKSANTH
GEAVHALAAAAKIEADKEVVDLDAISGIASCITSGTKLRVLGAMLSTSLP
NDIARSLKKMDTSVSKHFEVTKSVLKALAWLGQVAGNIAKSGDSGNDVMS
LPNTGSRPWWEAISPNHMLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015940UBA
IPR009060UBA-like_sf
IPR016024ARM-type_fold