Ggra5758.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5758.t1
Unique NameGgra5758.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length893
Homology
BLAST of Ggra5758.t1 vs. uniprot
Match: R7QS45 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS45_CHOCR)

HSP 1 Score: 207 bits (528), Expect = 8.640e-54
Identity = 169/596 (28.36%), Postives = 281/596 (47.15%), Query Frame = 0
Query:  311 SSAVRFLLAYHICFRFVESPVFR------RVPYYRFQRV----AKVGKAGVTSSSDMLTRFPSEGELMECLTNSSRSDIIDGLSTRISRHRYNGHLIICFAEPENPMYSNRGVC--PSDPRHDMPVASYFCFTPYTESEAAQVSYMGSRSCGFDPSSTCLSSIIDEAENQVSV---QFRHILLSRPIGSRLLLSSPQTRGSYD-WTLDLCREVDALCREMLSKTPFLTRVHRRNRIIASFFLGQSNGSTGSRLFGGSDSEKDIYHRYISSVSGFSSEFFWYSSHAVQIAICTGNLLRTAQAGQSYKHRVREMHKFMTSLSEENCGNIILCREVVRLLLSPSYLKDLKDFVTFLKPLTNLISLY-CSDDAMQHWSTLSAMPRIVQSRSIGYVLYDCTRAFSDMQTHDEQRSK---EFRTLKEHVFTRLFREGPNGLPPIVSDICYLAAILNPTVDVDT-SFLSRDEILSRAIQVARDKY-YHAELALGR---ELPEFLKSKLHLLETSSKSNPSMGINYEDPLVWWTKYGGNTPDLHHVALQVLSLPATTLAVIRFITNTNAQCDDLRGHSRDSLREKRRFTSWNLKLGDLSFQSES 881
            ++ VRF + + I FR  ES +F        +     +R+    A   K    S        P    L     +S  +  +D   + I     + +LII F +  N   S   +   P++   +   AS    T +  +  A++ Y+GSR+C  D  S C++ ++ +++    +       + + RP  +    +        + W  D+ REVD L +++L++ P L+R  RRN ++ASFF    +      LFG + +EK+   RY + ++            AV+ A  T  +L  AQ+    + R +E   F+ +++EE+ GN+ LC+E+ RL+LS  YL +L+ F+  +KPL  LI  Y C DD++      S+ P     RS+ +VL DC     D+  + EQR +   + R L+     RL  +G +  PPIV DICYLA  LNPT ++     ++ DE   RA+     +Y   +++ L R   +L +F +      E      P      EDP +WW K+G   PDL  +AL+VL  P     +++  +  N +  DL    +D L EK+RF  WNL+L + +  S++
Sbjct:    3 TAIVRFFVRHAIDFRAAESKLFADLLESAAISQGTNERIDQGFADSKKLQHCSGVPERYTIPHGNALQAFWEHSPAAQFVDTDLSNIGEFPSSRYLIIYFPDYANAQPSRHALRRQPTEDEGNSGEASMIAST-FLWTSGAKLYYIGSRNCSHDFKS-CIAELVLQSKETCKLGKAALDQVFIGRPFETSEQSADVTKNDPVNTWISDVPREVDILAQQLLTQVPVLSRCVRRNTLLASFFRETYSSRAAVMLFGRNLAEKEQCARYKAHIA--LPLQLTRCCDAVENAQQTFKILSHAQSSHKDRQRFQETSSFLHTINEESAGNVQLCQEITRLVLSQPYLNELEIFIAVMKPLAKLIEKYTCVDDSLSASDMGSSAPLASGGRSLAHVLPDCFSTLRDI--YKEQRPELENDLRLLRAMSARRLMGQGGDEYPPIVGDICYLATFLNPTSNLAAMKGITVDESWRRAVSFLHFQYGSRSDVVLDRAIEQLQDFHQRSGAFAEPGIFIAPDE-TEQEDPRIWWQKHGRLAPDLFTIALKVLDAPTAAFPIVKLASEMNGRHSDLYSTEKDELMEKKRFLLWNLRLSERADTSKN 591          
The following BLAST results are available for this feature:
BLAST of Ggra5758.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QS458.640e-5428.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 794..840
e-value: 9.8E-6
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..212
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 802..854

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:674055..676733 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5758.t1Ggra5758.t1Gracilaria gracilis GNS1m malemRNAtig00000897_pilon 674055..676733 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5758.t1 ID=Ggra5758.t1|Name=Ggra5758.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=893bp
MERIEPTDDAMPPWALGQGPPIHITERIANDNDTLADLCTSTTESRRRRG
RPRSSIFAYYTRMEDEDGMFLGNQCRFCSFISRDKSENPTYLSRHIRKAC
RAPDHVKESVGMRKPPTGLFLPGGTPFSTGNDGVGNYRTTQAVNPTFRTC
PRSSYDESRCLKTSIYPTVNLVAKTRAIRDSTQPSYSLENKSRGTTSSTL
SPLSRVEKSRRTRQQTLRLSSACGNSIGEVEVKRSQVFPHGQLREAKFLL
PRASIPIEVKGKSLNGLHPSNLCLKRYNPCVSVVSETVSELLRHSQCGKQ
WTNSKLPDRMSSAVRFLLAYHICFRFVESPVFRRVPYYRFQRVAKVGKAG
VTSSSDMLTRFPSEGELMECLTNSSRSDIIDGLSTRISRHRYNGHLIICF
AEPENPMYSNRGVCPSDPRHDMPVASYFCFTPYTESEAAQVSYMGSRSCG
FDPSSTCLSSIIDEAENQVSVQFRHILLSRPIGSRLLLSSPQTRGSYDWT
LDLCREVDALCREMLSKTPFLTRVHRRNRIIASFFLGQSNGSTGSRLFGG
SDSEKDIYHRYISSVSGFSSEFFWYSSHAVQIAICTGNLLRTAQAGQSYK
HRVREMHKFMTSLSEENCGNIILCREVVRLLLSPSYLKDLKDFVTFLKPL
TNLISLYCSDDAMQHWSTLSAMPRIVQSRSIGYVLYDCTRAFSDMQTHDE
QRSKEFRTLKEHVFTRLFREGPNGLPPIVSDICYLAAILNPTVDVDTSFL
SRDEILSRAIQVARDKYYHAELALGRELPEFLKSKLHLLETSSKSNPSMG
INYEDPLVWWTKYGGNTPDLHHVALQVLSLPATTLAVIRFITNTNAQCDD
LRGHSRDSLREKRRFTSWNLKLGDLSFQSESKAYLQRQEAIF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf