Ggra5728.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5728.t1
Unique Name	Ggra5728.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	192

Homology

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A2V3IP59 (Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP59_9FLOR)

HSP 1 Score: 335 bits (860), Expect = 3.100e-106
Identity = 159/190 (83.68%), Postives = 176/190 (92.63%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            MRGRPTLWLPGTDHAGIATQLVV  ELAK+G+TRD+LGRE FLKRVW+W+EEKGDYINVQMRRLGASCDWDRSRFTLE+ MSAAVAEAFKRLHDQGL+Y+G YMVNWSP LRTAVSDLEV+FSEEN KLYYF+Y LS+G+G IPVATTRP TILGDTAVCVH  DER+ QYVG+TV+VPV GR+IPVI+D
Sbjct:  152 MRGRPTLWLPGTDHAGIATQLVVEKELAKDGLTRDQLGRENFLKRVWKWKEEKGDYINVQMRRLGASCDWDRSRFTLEEHMSAAVAEAFKRLHDQGLIYRGDYMVNWSPTLRTAVSDLEVEFSEENGKLYYFRYPLSDGSGFIPVATTRPETILGDTAVCVHPADERYSQYVGKTVRVPVTGRDIPVIAD 341

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A2V3IF27 (Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF27_9FLOR)

HSP 1 Score: 288 bits (738), Expect = 4.580e-96
Identity = 139/176 (78.98%), Postives = 155/176 (88.07%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETV 176
            MRGRPTLWL GT+HAGIATQLVV  EL K+G+TRD+LG E FLKRV +W+EEKGDYINVQMRR GASCDWDRSRFTLE+ MSAAVAEAFKRLHDQGL+Y+G YMVNWSP LRTAVSDLE +FSEENRKLYYF Y LS+G+G IPVATT P  ILGDTA+CV+  DER+ QYVG+TV
Sbjct:   68 MRGRPTLWLRGTNHAGIATQLVVQKELTKDGLTRDQLGPENFLKRVCKWKEEKGDYINVQMRRPGASCDWDRSRFTLEERMSAAVAEAFKRLHDQGLIYRGDYMVNWSPTLRTAVSDLEAEFSEENRKLYYFWYPLSDGSGFIPVATTPPEIILGDTALCVNPADERYSQYVGKTV 243

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A2V3IIX2 (Valine--tRNA ligase n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIX2_9FLOR)

HSP 1 Score: 280 bits (716), Expect = 1.700e-93
Identity = 135/176 (76.70%), Postives = 152/176 (86.36%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETV 176
            MRGR TL+LPGT+HA IATQLVV  EL KEG+TRD+LG E FLKRVW+W+EEKGDYINV MRRLGASCDWDRS FTLE+ MSAAVAEAFKRLHDQGL+Y+G YMV+W P LRTAVSDLEV+ SEE  KLYYF+Y LS+G+G IPVATT P  ILGDTA+CVH  DER+ QYVG+TV
Sbjct:   15 MRGRHTLYLPGTNHAVIATQLVVEKELTKEGLTRDQLGPENFLKRVWKWKEEKGDYINVHMRRLGASCDWDRSLFTLEERMSAAVAEAFKRLHDQGLIYRGDYMVSWRPTLRTAVSDLEVELSEEKGKLYYFRYPLSDGSGFIPVATTPPEIILGDTALCVHPADERYSQYVGKTV 190

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A7S0YX46 (Valine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YX46_9CRYP)

HSP 1 Score: 271 bits (694), Expect = 7.040e-88
Identity = 129/190 (67.89%), Postives = 155/190 (81.58%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            MRGRPTLWLPGTDHAGIATQL+V   L  EGI+R ++GREKFL++VW W+EEKG YI  Q+RRLGAS DW R RFT+++ +S A AEAF +LHD+GLVY+G YMVNWSPNL+TAVSDLEV++S+E  KLYYF+Y +      + VATTRP TILGDTAVCVH EDER+K  VG+TV VP  GREIP+I+D
Sbjct:  128 MRGRPTLWLPGTDHAGIATQLLVERSLNAEGISRYDIGREKFLEKVWDWKEEKGGYILSQLRRLGASADWSRERFTMDEGLSRATAEAFVQLHDKGLVYRGEYMVNWSPNLQTAVSDLEVEYSDEEGKLYYFKYPIKGSDEHLEVATTRPETILGDTAVCVHPEDERYKHLVGKTVVVPTQGREIPIIAD 317

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A7R9YBQ2 (Valine--tRNA ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ2_9STRA)

HSP 1 Score: 275 bits (703), Expect = 2.990e-84
Identity = 131/190 (68.95%), Postives = 157/190 (82.63%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            MRG PTLW+PGTDHAGIATQL V   L  EG +R E+GR+ FLKRVW W+EEKG YI  QM+RLGAS DW R RFTLE  MS AVAEAF RLH+QGLVY+G YMVNWSPNL+TA+SDLEV+++EE  +L+YF+Y L++G+G +PVATTRP TILGDTAVCVH ED+R+K +VG+ VKVP+  R IPVI+D
Sbjct:   50 MRGHPTLWVPGTDHAGIATQLQVEKALLAEGTSRVEIGRDAFLKRVWEWKEEKGGYILKQMQRLGASADWSRERFTLEPDMSDAVAEAFVRLHEQGLVYRGDYMVNWSPNLQTAISDLEVEYAEEEGRLFYFRYDLADGSGHLPVATTRPETILGDTAVCVHPEDDRYKSFVGKEVKVPMSDRTIPVITD 239

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A836CET5 (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET5_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.260e-83
Identity = 135/193 (69.95%), Postives = 158/193 (81.87%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGC--IPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISDT 191
            MRG PTLW+PGTDHAGIATQ++V   L +EG+ R ELGREKFL+RVW+W+EEKG YI  QMR LGAS DW R RFTLE  MSAAV EAF RLH++GLVYKG YMVNWSP+L+TAVSDLEV++SEE  KLYYFQY ++  +    IPVATTRP TILGDTAVCVH +DER+K  +G++V VP  GREIPVI+DT
Sbjct:  156 MRGEPTLWVPGTDHAGIATQMLVERALREEGVERRELGREKFLERVWQWKEEKGGYIINQMRSLGASADWSRERFTLEPDMSAAVVEAFVRLHEKGLVYKGDYMVNWSPSLQTAVSDLEVEYSEEMGKLYYFQYRVAGASESDFIPVATTRPETILGDTAVCVHPDDERYKHLIGKSVVVPTQGREIPVIADT 348

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A5J4YWJ6 (Valine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWJ6_PORPP)

HSP 1 Score: 274 bits (701), Expect = 6.440e-83
Identity = 133/195 (68.21%), Postives = 158/195 (81.03%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEG--ITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGC---IPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            M+G  TLWLPGTDHAGIATQL+V   LAKE   + + +LGRE FL+RVW+W+EEKG YI  QMRRLGASCDW R RFTL+D  SAAVAEAF RLH++GL+Y+G YMVNWSPNL+TAVSDLEV+FS+E  KLYYF+Y+L   T     IPVATTRP TILGD+AVCVH ED RFK+ +G+ V VP++GR IPVI+D
Sbjct:  195 MKGECTLWLPGTDHAGIATQLLVERALAKESPPLKKTDLGREAFLERVWKWKEEKGGYITQQMRRLGASCDWSRERFTLDDQCSAAVAEAFVRLHEKGLIYRGEYMVNWSPNLQTAVSDLEVEFSDEQGKLYYFKYMLEGATDADEYIPVATTRPETILGDSAVCVHPEDPRFKKLIGKKVLVPILGRSIPVIAD 389

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A7S4P8A2 (Valine--tRNA ligase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P8A2_GUITH)

HSP 1 Score: 275 bits (703), Expect = 9.400e-83
Identity = 129/191 (67.54%), Postives = 158/191 (82.72%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISDT 191
            M G+PTLWLPGTDHAGIATQL+V   L  EG +R +LGR+KFL RVW W+ EKG YI  Q+RRLGAS DW R RFT++D +S+AVAEAF RLH++GLVY+G YMVNWSPNLRTAVSDLEV++SEE  KL++F+Y L++    +PVATTRP TILGDTAVCVH EDER+K+++G+ VKVP   REIP+I+DT
Sbjct:  254 MTGKPTLWLPGTDHAGIATQLLVERSLNAEGKSRYDLGRDKFLDRVWEWKSEKGGYITQQLRRLGASADWSRERFTMDDGLSSAVAEAFVRLHEKGLVYRGEYMVNWSPNLRTAVSDLEVEYSEEEGKLFFFKYQLADEDAFLPVATTRPETILGDTAVCVHPEDERYKKFIGKKVKVPFQDREIPIIADT 444

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A7S3XNU9 (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK)

HSP 1 Score: 272 bits (695), Expect = 2.220e-82
Identity = 133/195 (68.21%), Postives = 156/195 (80.00%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSN-----GTGCIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            M+G PTLWLPGTDHAGIATQL+V   LA+EG +R ELGRE FL+RVW W+EEKG  I  QMRRLGAS DW R RFTLE  MSAAV EAF  LH++GL+YKG YMVNWSP+L+TAVSDLEV++SEE  KLYYF+Y+L++     G   +PVATTRP TILGDTAVCVH ED R+K  +G+TV VP  GREIP+I+D
Sbjct:  149 MKGGPTLWLPGTDHAGIATQLLVERALAEEGTSRQELGREAFLERVWAWKEEKGGAITGQMRRLGASADWSRERFTLEPEMSAAVTEAFVTLHERGLIYKGDYMVNWSPHLQTAVSDLEVEYSEEEGKLYYFKYMLADPAEGGGADHLPVATTRPETILGDTAVCVHPEDPRYKHLIGKTVVVPTQGREIPIIAD 343

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BLAST of Ggra5728.t1 vs. uniprot
Match: A0A7C4KJH5 (Valine--tRNA ligase (Fragment) n=1 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=A0A7C4KJH5_9CHLR)

HSP 1 Score: 258 bits (658), Expect = 2.400e-82
Identity = 118/191 (61.78%), Postives = 159/191 (83.25%), Query Frame = 0

Query:    1 MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWEEEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYKGSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTG-CIPVATTRPGTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISD 190
            M+G PTLW+PGTDHAGIATQL V   LA+EG++RD++GRE+F++R W W+ + G  I  Q+RRLGASCDW+R RFTL+  +S AV EAF RL+++G++Y+G  M+NWSP LRTAVSDLEV++S+E   LYYF+Y+L++G+G  IPVATTRP TILGD+AV VH EDER+++++G+ V VP++GREIPVI+D
Sbjct:   80 MKGVPTLWVPGTDHAGIATQLQVEKMLAREGLSRDQIGREEFVRRAWEWKNKYGGIITRQIRRLGASCDWERERFTLDKGLSKAVREAFVRLYEKGMIYRGPRMINWSPGLRTAVSDLEVEYSQEQGTLYYFKYMLADGSGEYIPVATTRPETILGDSAVAVHPEDERYQRFIGKKVVVPILGREIPVIAD 270

The following BLAST results are available for this feature:

BLAST of Ggra5728.t1 vs. uniprot

BLAST of Ggra5728.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IP59	3.100e-106	83.68	Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda ...	[more]
A0A2V3IF27	4.580e-96	78.98	Valine--tRNA ligase n=1 Tax=Gracilariopsis chorda ...	[more]
A0A2V3IIX2	1.700e-93	76.70	Valine--tRNA ligase n=2 Tax=Gracilariopsis chorda ...	[more]
A0A7S0YX46	7.040e-88	67.89	Valine--tRNA ligase (Fragment) n=1 Tax=Hemiselmis ...	[more]
A0A7R9YBQ2	2.990e-84	68.95	Valine--tRNA ligase (Fragment) n=1 Tax=Pinguiococc...	[more]
A0A836CET5	1.260e-83	69.95	Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=...	[more]
A0A5J4YWJ6	6.440e-83	68.21	Valine--tRNA ligase n=1 Tax=Porphyridium purpureum...	[more]
A0A7S4P8A2	9.400e-83	67.54	Valine--tRNA ligase n=1 Tax=Guillardia theta TaxID...	[more]
A0A7S3XNU9	2.220e-82	68.21	Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T...	[more]
A0A7C4KJH5	2.400e-82	61.78	Valine--tRNA ligase (Fragment) n=1 Tax=Anaerolinea...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620	HUPs	coord: 1..121 e-value: 7.0E-30 score: 106.1
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	GENE3D	3.90.740.10		coord: 125..191 e-value: 1.0E-14 score: 56.4
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	SUPERFAMILY	50677	ValRS/IleRS/LeuRS editing domain	coord: 124..190
IPR002300	Aminoacyl-tRNA synthetase, class Ia	PFAM	PF00133	tRNA-synt_1	coord: 1..165 e-value: 5.7E-52 score: 176.8
None	No IPR available	PANTHER	PTHR11946:SF93	VALYL-TRNA SYNTHETASE, ISOFORM C	coord: 1..190
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 1..124
IPR002303	Valine-tRNA ligase	PANTHER	PTHR11946	VALYL-TRNA SYNTHETASES	coord: 1..190

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000897_pilon	contig	tig00000897_pilon:145024..145599 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5728.t1	Ggra5728.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000897_pilon 145024..145599 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5728.t1 ID=Ggra5728.t1|Name=Ggra5728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MRGRPTLWLPGTDHAGIATQLVVGNELAKEGITRDELGREKFLKRVWRWE
EEKGDYINVQMRRLGASCDWDRSRFTLEDLMSAAVAEAFKRLHDQGLVYK
GSYMVNWSPNLRTAVSDLEVDFSEENRKLYYFQYLLSNGTGCIPVATTRP
GTILGDTAVCVHLEDERFKQYVGETVKVPVIGREIPVISDT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold
IPR009008	Val/Leu/Ile-tRNA-synth_edit
IPR002300	aa-tRNA-synth_Ia
IPR002303	Valyl-tRNA_ligase