Ggra5681.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5681.t1
Unique NameGgra5681.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Homology
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A2V3IX62 (Transcription elongation factor SPT4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX62_9FLOR)

HSP 1 Score: 224 bits (571), Expect = 6.920e-74
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 0
Query:    1 MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLATTDKP 123
            M+   G+HVVPTEV QS+LKACMSCSLIKTTQQFYTDGCDNC FMSL GDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYA+HIDAR+PDDIVEQLEEN IR++SV+ATT+KP
Sbjct:    1 MSNNDGSHVVPTEVAQSKLKACMSCSLIKTTQQFYTDGCDNCDFMSLAGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAVHIDARLPDDIVEQLEENGIRVYSVVATTEKP 123          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A7S0BQA9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQA9_9RHOD)

HSP 1 Score: 127 bits (320), Expect = 1.880e-35
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLATTD 121
            +VPT+ + S+L+ C+SCSL+KT  QF T+GC+NCPF+++ GDKERI  CT++  +G Y  MNP  SWVA+WQR     PG YAI IDA +P+ I E+L E  IR+    AT +
Sbjct:   24 MVPTDWS-SKLRGCLSCSLVKTVNQFATNGCENCPFLNMQGDKERIMDCTSNSILGIYTTMNPRTSWVARWQRTVKLRPGCYAIAIDATLPEGIEEELSEQGIRVKRTRATAE 135          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A7S1TIX5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIX5_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 8.210e-35
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 0
Query:   11 PTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLATT 120
            PTE + ++L+ACM+CSL+K+  QF   GC+NCPF+ L  D+ERI  CTT  F G + VM P +SWVAKWQR+     G YA+ ++  +P+DI+E++ EN  + H V AT+
Sbjct:    9 PTETSLNKLRACMNCSLVKSAHQFSIRGCENCPFLGLENDRERIQLCTTPNFSGLFSVMRPLESWVAKWQRIVKLRSGCYALSVEGELPEDIIEEMLENGGKAHRVRATS 118          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A7S0ZLH4 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZLH4_9RHOD)

HSP 1 Score: 124 bits (312), Expect = 1.810e-34
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLAT 119
            +VP E   ++L+AC+SCSL+KT +QFY  GCDNCP + L  D E I+ CT++ F GTYV++ P  SWV+KWQR   F PG YAI ID ++P    E+L EN  R++ + AT
Sbjct:    8 IVPQEFGMNKLRACLSCSLVKTQKQFYDQGCDNCPGLMLQRDSEAIAVCTSNAFSGTYVLLRPKDSWVSKWQRTRRFRPGCYAIQIDIQLPQSEEERLVENGQRVNRIRAT 118          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A5J4YSZ5 (Transcription elongation factor SPT4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSZ5_PORPP)

HSP 1 Score: 121 bits (304), Expect = 3.150e-33
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCP-FMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLAT 119
            VVP E  +++L+AC+SCSL+KT  QF+ DGCDNC  F ++ GD+ER+   TT  F+G Y +MNP +SWV+K+Q V +FVPG YAI +DA +P  + E   EN  R+  + AT
Sbjct:   10 VVPLEFNRTKLRACLSCSLVKTATQFFRDGCDNCERFAAMKGDEERVEEATTPAFLGVYALMNPKESWVSKYQNVRTFVPGCYAISMDAELPAYLEEVYRENGGRVKQIRAT 121          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A1X6P9H5 (Spt4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9H5_PORUM)

HSP 1 Score: 122 bits (305), Expect = 4.620e-33
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    8 HVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVA-SFVPGAYAIHIDARMPDDIVEQLEENRIRMHSVLAT 119
             V+PTE   S+L+AC+SCSLIKT +QF  DGCDNC F+ +   ++R+  CT+  FVG   V NP  SWV +WQR+  + V G YAI +DA++P+DI E LE+N  R+    AT
Sbjct:   32 RVIPTEFLPSKLRACLSCSLIKTAEQFLLDGCDNCDFLDMANSRDRVGQCTSGAFVGVAGVANPADSWVGRWQRLGRNAVAGCYAIGVDAKLPEDIRESLEDNGYRVARTRAT 144          
BLAST of Ggra5681.t1 vs. uniprot
Match: M1V579 (Spt4 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V579_CYAM1)

HSP 1 Score: 112 bits (280), Expect = 1.160e-29
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCP--FMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEENRIRMHS 115
            VVP+EV  S+L+AC+SC L+K+  QF   GC+NCP  F +  GD+ER+   TT++F G   +  P  SWVAKWQR++  VPG YAI I A +PDD++E+LE  R  + S
Sbjct:   10 VVPSEVQSSKLRACLSCGLVKSVAQFLAYGCENCPGLFEAGTGDRERVLTFTTAEFSGLVALYRPKVSWVAKWQRLSRKVPGCYAIGILAELPDDVLEELEALRFDVES 118          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A7J7IN23 (Transcription elongation factor SPT4 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN23_9RHOD)

HSP 1 Score: 109 bits (272), Expect = 1.900e-28
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    9 VVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFM--SLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLE 107
            VVP+E+  S+L+AC+SC L+K+  QF   GC+NCP +  +  GD+ER+   TT++F G   +  P +SWVA+WQR++  VPG YA+ I A +PDD++E+L+
Sbjct:   10 VVPSEIQSSKLRACLSCGLVKSVAQFLAYGCENCPGLIEAGTGDRERVLTFTTTEFSGITALYKPKRSWVARWQRLSQLVPGCYAVGIHANVPDDVLEELD 110          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A7S3LYU5 (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYU5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.250e-28
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   19 LKACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLE 107
            L+AC+ CSLIKT +QF   GC+NC F+ L G+K RI  CTTS F G   ++ P  SWVAKWQR+A + PG YAI +   +PDD++E  E
Sbjct:   19 LRACLRCSLIKTFEQFNDKGCENCEFIDLEGNKGRIEECTTSYFEGAIALVEPQGSWVAKWQRIAQYQPGLYAIEMIGELPDDVIEHCE 107          
BLAST of Ggra5681.t1 vs. uniprot
Match: A0A1Y2XBR0 (Transcription elongation factor SPT4 n=1 Tax=Daldinia sp. EC12 TaxID=1001832 RepID=A0A1Y2XBR0_9PEZI)

HSP 1 Score: 106 bits (265), Expect = 1.590e-27
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 0
Query:   20 KACMSCSLIKTTQQFYTDGCDNCPFMSLNGDKERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPDDIVEQLEE 108
            +ACM CS+I T   F  +GC NCPF+ L G  E I ACT+SQF GT     P +SWVA+WQRV +FVPG YAI ++  +P+DI   +E+
Sbjct:   12 RACMVCSIIMTQAHFRAEGCPNCPFLDLKGSPEAIEACTSSQFEGTMACFQPRRSWVARWQRVDTFVPGTYAIKVNGSLPEDIKVAMED 100          
The following BLAST results are available for this feature:
BLAST of Ggra5681.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX626.920e-7486.99Transcription elongation factor SPT4 n=1 Tax=Graci... [more]
A0A7S0BQA91.880e-3551.33Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TIX58.210e-3548.18Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZLH41.810e-3450.45Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YSZ53.150e-3350.00Transcription elongation factor SPT4 n=1 Tax=Porph... [more]
A0A1X6P9H54.620e-3349.56Spt4 domain-containing protein n=1 Tax=Porphyra um... [more]
M1V5791.160e-2949.54Spt4 domain-containing protein n=1 Tax=Cyanidiosch... [more]
A0A7J7IN231.900e-2846.53Transcription elongation factor SPT4 n=1 Tax=Cyani... [more]
A0A7S3LYU56.250e-2852.81Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1Y2XBR01.590e-2751.69Transcription elongation factor SPT4 n=1 Tax=Daldi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 19..95
e-value: 2.4E-31
score: 120.1
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 19..94
e-value: 2.0E-29
score: 101.5
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 18..112
e-value: 1.57301E-40
score: 128.51
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 7..121
e-value: 3.0E-38
score: 128.2
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 10..115
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 3..110
e-value: 4.1E-37
score: 128.3
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 14..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1344828..1345355 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5681.t1Ggra5681.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1344828..1345355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5681.t1 ID=Ggra5681.t1|Name=Ggra5681.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MAQASGAHVVPTEVTQSRLKACMSCSLIKTTQQFYTDGCDNCPFMSLNGD
KERISACTTSQFVGTYVVMNPTKSWVAKWQRVASFVPGAYAIHIDARMPD
DIVEQLEENRIRMHSVLATTDKPDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022800Spt4/RpoE2_Znf
IPR009287Spt4
IPR038510Spt4_sf
IPR029040RPABC4/Spt4