Ggra5646.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5646.t1
Unique NameGgra5646.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Homology
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BLAST of Ggra5646.t1 vs. uniprot
Match: A0A2V3IU93 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU93_9FLOR)

HSP 1 Score: 221 bits (563), Expect = 1.110e-65
Identity = 146/366 (39.89%), Postives = 211/366 (57.65%), Query Frame = 0 
Query:    1 MSSTPVSKKALPDPIPVRSVFPYGRPTAEEYAHKFNNYGGGVNPLGYLGHEFAPDGSYGYRPPSRPSKPFRKCTRN-LPPQPKPASFDVGFDDEAVLSMTIPEHISKEIQRSAPDSQRHDD---TCCPLISKSSGAIPLPWACVTQSTVLNRYVFVTWRLLLLALSLTALIFSFVYGVTASSLIVSCVFTVAVMKDVSISFALLSYYVKRRPLWKESDVLWVIGTMFQIAAHVTLAAPIVLFNNYLFATS-GDSVEQYAKSPSAYFLGVQLF-VVLLDILVTPLPPRPYGVLIGS---LVIGLSGVFPVMETTASRLFTAIGILAASSVGLGLILHLGISAVYFYLHAPRLARMLTSSKAKESNSD 357
            MS TP SK  L +PI VRSV PY  PTAEEYA +FNNYGGGVNPLGY+GHEFA DGSYGYRP + P +P     +  LPPQP+PASFD G DDE  LSM +PE   + I R+  +  + D+   T C L S ++ ++  PW  + +S VLN+YVF  W + LL+ SL  LI   VYG +  SLIV   F     +++ +   ++ +  ++ P W+E  ++ ++G   Q AA+VT + P++L  NY   +S  + +  Y KS  + +L + L  + LLD + T LPP   G ++G+    +IG  G+ P  +      F    +L  +SVG+ ++    +  +    H PRL RM+ +S   +  SD
Sbjct:    1 MSPTPRSKP-LTEPIRVRSVAPYALPTAEEYADRFNNYGGGVNPLGYMGHEFAADGSYGYRPRAYPKRPLVSSRKPPLPPQPRPASFDFGMDDEDALSMPVPETSRRGIARAQVEHHQDDESTHTGCLLWSSATPSLSSPWITIVRSPVLNKYVFFVWHIALLSYSLAGLIVVTVYGFSRHSLIVCGAFCTVFARELVLVIGIVVFTCQKYPEWRER-IIRLVGITTQAAANVTFSVPVILAINYPNGSSLRNELVTYMKSTPSIYLALALCSLYLLDFVFTGLPPSLGGFVLGAGLTFMIGFPGL-PPGDYNLPSFF----LLILASVGVSVVAGCLMKFLILSFHEPRLLRMMAASSPADVTSD 359
The following BLAST results are available for this feature:
BLAST of Ggra5646.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IU931.110e-6539.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..337
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 283..301
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 302..306
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 239..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 258..276
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 338..365
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..155
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 204..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 156..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 277..282
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..203
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 257..276
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 315..337
NoneNo IPR availableTMHMMTMhelixcoord: 215..237
NoneNo IPR availableTMHMMTMhelixcoord: 283..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1238501..1239715 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5646.t1Ggra5646.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1238501..1239715 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5646.t1 ID=Ggra5646.t1|Name=Ggra5646.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MSSTPVSKKALPDPIPVRSVFPYGRPTAEEYAHKFNNYGGGVNPLGYLGH
EFAPDGSYGYRPPSRPSKPFRKCTRNLPPQPKPASFDVGFDDEAVLSMTI
PEHISKEIQRSAPDSQRHDDTCCPLISKSSGAIPLPWACVTQSTVLNRYV
FVTWRLLLLALSLTALIFSFVYGVTASSLIVSCVFTVAVMKDVSISFALL
SYYVKRRPLWKESDVLWVIGTMFQIAAHVTLAAPIVLFNNYLFATSGDSV
EQYAKSPSAYFLGVQLFVVLLDILVTPLPPRPYGVLIGSLVIGLSGVFPV
METTASRLFTAIGILAASSVGLGLILHLGISAVYFYLHAPRLARMLTSSK
AKESNSDTFSGYGYS*
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