Ggra5598.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5598.t1
Unique Name	Ggra5598.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	215

Homology

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A2V3IDC9 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDC9_9FLOR)

HSP 1 Score: 345 bits (885), Expect = 5.100e-116
Identity = 159/211 (75.36%), Postives = 180/211 (85.31%), Query Frame = 0

Query:    4 ESISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGPL 214
            +SI     KH+F FLGGRDLARAREVC RWN F SEE LW++LC  NW +LE+D  +W ++D+ I  G  NCWR+IYPKIE  PKWT RLQKTGRF+ NL+AHQISGTP+GDVGLP VLVVE+RF IVHLQ ++L+DA+VLYFEPESE DR GFDEFIEYLNKRTRAGLALE+QRRFIFIPPCDYTRT+I YHGRSLLGVVQNAYNPLGPL
Sbjct:  196 KSIPDETAKHIFSFLGGRDLARAREVCTRWNRFGSEEGLWRKLCLANWSALESDPAVWSLIDRCIPLGSYNCWRSIYPKIENIPKWTCRLQKTGRFVCNLVAHQISGTPVGDVGLPKVLVVERRFNIVHLQTFVLHDAAVLYFEPESEADRHGFDEFIEYLNKRTRAGLALEDQRRFIFIPPCDYTRTQINYHGRSLLGVVQNAYNPLGPL 406

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A2V3IY22 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY22_9FLOR)

HSP 1 Score: 297 bits (761), Expect = 5.550e-100
Identity = 135/199 (67.84%), Postives = 159/199 (79.90%), Query Frame = 0

Query:   12 KHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNP 210
            +HVF FLG R+LARAREVC RWN  A  E LWK+LC  +W +LETD  LW+++D+ IS  D NCWRN+YPKIE  PKWT  LQKT  F+ NL+AHQ+SGTP+GDVGLP VLVVE+RF IVHLQ + L+DA+VLYFEPESE DR GFDEFIEYL++R RAGLALE +RRF+  PPCDY R ++ YHGRSLLG VQ AY P
Sbjct:   12 RHVFQFLGARELARAREVCSRWNALAGGEHLWKKLCVADWAALETDQELWQLIDRAISLDDANCWRNMYPKIENIPKWTCCLQKTRSFVCNLVAHQVSGTPVGDVGLPKVLVVERRFSIVHLQTFALHDAAVLYFEPESEADRHGFDEFIEYLSQRARAGLALEAERRFVLFPPCDYGRIQLGYHGRSLLGFVQYAYPP 210

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BLAST of Ggra5598.t1 vs. uniprot
Match: S0F3M8 (F-box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3M8_CHOCR)

HSP 1 Score: 297 bits (761), Expect = 4.910e-96
Identity = 139/208 (66.83%), Postives = 167/208 (80.29%), Query Frame = 0

Query:    6 ISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGP 213
            I   + KH+FGFL G+ LARAREVC RWNDFA EE LWK LC + W++LE+D  LW+++DK++ P  PNCWR I+PK+  T +W  RLQKTGRFI NL+AHQISGTP+   GLP VLVVE+RF I+HLQ ++  DAS+LYFEPE   DR GFD+FI+YLNKRTRAGLALE Q RFIFIPPCDYTRT++EY G+SLLGVVQ+AY PL P
Sbjct:  293 IPDELAKHIFGFLEGKHLARAREVCHRWNDFACEEPLWKSLCLKKWKALESDKDLWKLVDKDVDPEGPNCWRKIFPKVSNTSQWRCRLQKTGRFICNLVAHQISGTPLLG-GLPEVLVVERRFNILHLQTFVRPDASILYFEPELASDRTGFDDFIDYLNKRTRAGLALEGQLRFIFIPPCDYTRTQVEYPGQSLLGVVQHAY-PLVP 498

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A2V3IDD9 (F-box domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDD9_9FLOR)

HSP 1 Score: 281 bits (720), Expect = 1.480e-91
Identity = 129/201 (64.18%), Postives = 158/201 (78.61%), Query Frame = 0

Query:   10 IPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNP 210
            I KH+F FL G +LA  REVC +WN FAS E+ WK L T+ WRSLETD   W+++D  +    PN WR IYPK    PKW  RLQKTGRF+ NL+AHQI G PIGD GLP+VLVVE+RF + HLQ +++++ASVLYFEPESE+DR G+++FIEYL KRTRAGLAL++Q+RFIFIPPC+YTRT ++Y GRSLLGVVQ AY P
Sbjct:  167 ITKHIFSFLDGPNLAICREVCSKWNAFASCEKQWKTLVTRKWRSLETDVDAWKLIDSSVDVNAPNRWRMIYPKASAIPKWRCRLQKTGRFMCNLVAHQIRGAPIGDAGLPDVLVVERRFNLQHLQAFVMSEASVLYFEPESEQDRGGYEDFIEYLIKRTRAGLALDDQQRFIFIPPCEYTRTHVKYEGRSLLGVVQMAYPP 367

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A7S1XH60 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XH60_9RHOD)

HSP 1 Score: 260 bits (664), Expect = 1.060e-83
Identity = 123/207 (59.42%), Postives = 155/207 (74.88%), Query Frame = 0

Query:    5 SISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPL 211
            S+  +I + V   L G DL+RAR+VCKRW+ FAS+ERLWK LC   WR+LE+D  LW ++D  I   DP  WR IYP +    +WT RLQKTGRF+ +L+AHQISG P+G+ GLP+ LVVE+RF I HLQ ++L +ASVLYFEP  +EDR G++EFI YL +RTRAGLALE+ RRFIFIPPC Y++ ++ Y G SLLGVVQ AY PL
Sbjct:  109 SLGDSIIQRVMQALDGEDLSRARQVCKRWSSFASDERLWKHLCLSVWRALESDSALWAVIDASIQLSDPARWRKIYPSVRWRKRWTCRLQKTGRFVCDLVAHQISGGPLGEKGLPSTLVVERRFNISHLQTFVLPEASVLYFEPAKDEDRAGYEEFIAYLLRRTRAGLALEDHRRFIFIPPCAYSK-QLNYLGPSLLGVVQIAYPPL 314

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A7S1XDB5 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDB5_9RHOD)

HSP 1 Score: 265 bits (678), Expect = 2.600e-83
Identity = 119/210 (56.67%), Postives = 159/210 (75.71%), Query Frame = 0

Query:    4 ESISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGP 213
            E +   + K +FGFL G DLA  R VC++W++FA +E  WKRLC + WR+L  D  LW+++D  ++PG  + WR I+P I ++P+W   LQKTGRFI +L+AHQISG+P+G+ GLP+ LVVE+RF I HLQ ++L DASVLYFEPE+E+DR G+D+FIEYL KRTRAGLAL+ +RRFIFIPPC+++R    Y G +LLGV Q A+ PL P
Sbjct:  314 EDLPGELTKRIFGFLEGDDLAMVRLVCRKWDEFARDEEFWKRLCMKRWRALNNDAALWKLVDPNVAPGQVDSWRRIFPSISRSPQWRCTLQKTGRFICHLVAHQISGSPLGEGGLPHTLVVERRFNIAHLQTFVLPDASVLYFEPENEKDRSGYDDFIEYLVKRTRAGLALDNERRFIFIPPCEFSRAH-GYDGSALLGVAQEAHMPLLP 522

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A7S0ZCK1 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZCK1_9RHOD)

HSP 1 Score: 259 bits (662), Expect = 1.330e-82
Identity = 118/205 (57.56%), Postives = 153/205 (74.63%), Query Frame = 0

Query:    9 TIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGP 213
            +I +  F FL G DLARAR VC++W +FAS E LWKRLC + W +++TD  LW +++  +S  DP  WR +YP + K PKW  RLQKTGRFI +++AHQI G P+G+ GLP  LVVE+RF + HLQ ++L +ASVLYFEPE+ EDR G++EFIEYL +RTRAGLALE+QRRFIF+PPC Y+R  + Y G +LL VVQ +Y P  P
Sbjct:  178 SITQRAFRFLEGADLARARGVCRQWKEFASCESLWKRLCLEKWAAMDTDEALWDLVNSSVSTTDPEKWRKVYPAVAKRPKWRCRLQKTGRFICHVVAHQIGGAPLGERGLPYTLVVERRFNVAHLQTFVLPNASVLYFEPETPEDRPGYEEFIEYLLRRTRAGLALEDQRRFIFVPPCSYSR-HLSYDGAALLCVVQISYPPFAP 381

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A7S0G2G1 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2G1_9RHOD)

HSP 1 Score: 254 bits (649), Expect = 3.800e-82
Identity = 114/212 (53.77%), Postives = 152/212 (71.70%), Query Frame = 0

Query:    2 SEESISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGP 213
            S E +   + K +F FL G DLA  R VCK+WN+F+ E+R W+ LC + W SL+TD   WR++D+ +   DP+ WR IYPK+   P+W  RLQKTG+FI NL AHQI G  +GD GLP  LVVE+RF ++HL  ++L +A++LYFEP + EDR GF++FI+YL +R+RAGLALE  RRFIF+PPC Y++ K+ Y G SLLGVVQ  + PL P
Sbjct:   58 SIEGLPNELVKMIFSFLDGPDLANVRLVCKQWNEFSCEDRFWRELCIRLWPSLDTDKSTWRLIDEAVEATDPSKWRKIYPKVANRPRWKCRLQKTGKFICNLNAHQIRGPGLGDQGLPYTLVVERRFSLLHLNQFVLPEATMLYFEPVTPEDRPGFEQFIDYLVRRSRAGLALEGDRRFIFVPPCQYSQEKVNYDGHSLLGVVQILFPPLQP 269

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A7S2ZYW3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYW3_9RHOD)

HSP 1 Score: 254 bits (650), Expect = 1.150e-80
Identity = 115/212 (54.25%), Postives = 152/212 (71.70%), Query Frame = 0

Query:    2 SEESISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPLGP 213
            S E +   + K +F FL G DLA  R VCK+WN+F+ E+R W+ LC + W SL+TD   WR++D+ +   DP+ WR IYPK+   P+W  RLQKTG+FI NL AHQI G  +GD GLP  LVVE+RF ++HL  ++L +A++LYFEP + EDR GF++FI+YL KR+RAGLALE  RRFIF+PPC Y++ K+ Y G SLLGVVQ  + PL P
Sbjct:  180 SIEGLPNELVKLIFSFLDGPDLANVRLVCKQWNEFSCEDRFWRELCIRLWPSLDTDKSTWRLIDEAVEATDPSKWRKIYPKVANRPRWKCRLQKTGKFICNLNAHQIRGPGLGDQGLPYTLVVERRFSLLHLNQFVLPEATMLYFEPVTPEDRPGFEQFIDYLVKRSRAGLALEGDRRFIFVPPCHYSQEKVNYDGHSLLGVVQILFPPLQP 391

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BLAST of Ggra5598.t1 vs. uniprot
Match: A0A5J4YZ77 (Flowering time control protein FPA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ77_PORPP)

HSP 1 Score: 264 bits (675), Expect = 5.610e-80
Identity = 117/202 (57.92%), Postives = 155/202 (76.73%), Query Frame = 0

Query:   10 IPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQNWRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFIGNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPESEEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSLLGVVQNAYNPL 211
            + KH+  FL GR++ARAR+VC+ W + A +E +WK+LC + WRSL  D   W + +  +S  DPN WR IYP +     W  RLQKTGRFI ++IAHQ++G+ +G+ GLP+ LVVE+RF I+HLQ ++L DA+VLYFEPESE DR GF++FIEYL +RTRAGLAL+EQRRFIFIPPC+Y++  + Y G+SLLGVVQNA+ PL
Sbjct:  640 LTKHILSFLDGRNMARARQVCQTWREIACDEEIWKQLCIKEWRSLAADPDAWPLANPLVSHEDPNRWRKIYPSLVTGKSWRCRLQKTGRFICHMIAHQVNGSSLGERGLPDTLVVERRFNILHLQTFVLPDAAVLYFEPESEADRSGFEDFIEYLTRRTRAGLALDEQRRFIFIPPCEYSKDTLNYRGKSLLGVVQNAFPPL 841

The following BLAST results are available for this feature:

BLAST of Ggra5598.t1 vs. uniprot

BLAST of Ggra5598.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IDC9	5.100e-116	75.36	F-box domain-containing protein n=1 Tax=Gracilario...	[more]
A0A2V3IY22	5.550e-100	67.84	F-box domain-containing protein n=1 Tax=Gracilario...	[more]
S0F3M8	4.910e-96	66.83	F-box domain-containing protein n=1 Tax=Chondrus c...	[more]
A0A2V3IDD9	1.480e-91	64.18	F-box domain-containing protein n=2 Tax=Gracilario...	[more]
A0A7S1XH60	1.060e-83	59.42	Hypothetical protein n=1 Tax=Erythrolobus australi...	[more]
A0A7S1XDB5	2.600e-83	56.67	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A7S0ZCK1	1.330e-82	57.56	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A7S0G2G1	3.800e-82	53.77	Hypothetical protein n=2 Tax=Rhodosorus marinus Ta...	[more]
A0A7S2ZYW3	1.150e-80	54.25	Hypothetical protein n=2 Tax=Rhodosorus marinus Ta...	[more]
A0A5J4YZ77	5.610e-80	57.92	Flowering time control protein FPA n=1 Tax=Porphyr...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012921	Spen paralogue and orthologue SPOC, C-terminal	PFAM	PF07744	SPOC	coord: 104..189 e-value: 8.4E-9 score: 35.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 13..48 e-value: 1.1E-9 score: 38.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..46 score: 9.444481
None	No IPR available	GENE3D	1.20.1280.50		coord: 4..96 e-value: 2.2E-11 score: 45.5
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 12..80

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1073637..1074281 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5598.t1	Ggra5598.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000842_pilon 1073637..1074281 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5598.t1 ID=Ggra5598.t1|Name=Ggra5598.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MSEESISTTIPKHVFGFLGGRDLARAREVCKRWNDFASEERLWKRLCTQN
WRSLETDHYLWRILDKEISPGDPNCWRNIYPKIEKTPKWTFRLQKTGRFI
GNLIAHQISGTPIGDVGLPNVLVVEQRFKIVHLQMYILNDASVLYFEPES
EEDRQGFDEFIEYLNKRTRAGLALEEQRRFIFIPPCDYTRTKIEYHGRSL
LGVVQNAYNPLGPL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012921	SPOC_C
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf