Ggra5592.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5592.t1
Unique NameGgra5592.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Homology
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A2V3IDF8 (DNA-directed RNA polymerases II, IV and V subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDF8_9FLOR)

HSP 1 Score: 514 bits (1325), Expect = 1.090e-182
Identity = 246/314 (78.34%), Postives = 278/314 (88.54%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDD------TDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRVSNNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNVMAHIH 308
            MPFGR P L++KE++R +M+FSL GTDVSMANAIRRTMI+EVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENV+RFDYGFDCE+C+DYC+ CSVSF +QVH      VR VTSKD+ C+N ET++WCH+VKP+HDSGDD      +D GNGILIARLSSSQR+DI C+ARKGI KDHAKWSPMCTVSYRIVPPAVEL+LEKLNS+LE  AK DLA YSQGLL+V+N  LQYEEPFLKGRIGITPDTTRRAG+L T+AGGKPS+++RYN  PERFDF AETTG+MTP  ALLMALD+LKKRVDNVMAHIH
Sbjct:    1 MPFGRNPGLDIKESSRCYMNFSLNGTDVSMANAIRRTMIAEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVDRFDYGFDCEKCEDYCAYCSVSFQIQVHATGDTAVRNVTSKDIVCTNLETEEWCHDVKPVHDSGDDAETGADSDGGNGILIARLSSSQRLDIRCIARKGIAKDHAKWSPMCTVSYRIVPPAVELVLEKLNSLLEQDAKEDLAVYSQGLLKVTNGFLQYEEPFLKGRIGITPDTTRRAGQLATQAGGKPSDIVRYNPEPERFDFTAETTGSMTPRFALLMALDILKKRVDNVMAHIH 314          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A1X6PC39 (RPOLD domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC39_PORUM)

HSP 1 Score: 276 bits (705), Expect = 4.120e-88
Identity = 153/330 (46.36%), Postives = 200/330 (60.61%), Query Frame = 0
Query:    1 MPFGR-QPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETD-DWCHEVKPIHDSGD--------------------DTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRV-SNNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNVMAHI 307
            MP  R Q  L+     R  M F L  TDVSMANA+RRTMI+EVPTMA+DLVT+ ENT+ LHDEYIAHR+GLIPL S   + + Y  DC  CDD+C  CSVS+ L V      +V  VTS+DL  +    D      V P+HDSGD                       +  GILI +L+  QR+    +A+KGIGK+HAKWSP+CTV++R  PPAV  +L +LN +L+  AK DL   S G++ + +   L+Y+ PFL GR  IT D  RRAGEL   AGG  SE++ +   PERF+F+ ETTG + P   L  A+ +L+++V NV AH+
Sbjct:    1 MPNARDQVQLDSVTLGRNDMRFILRNTDVSMANALRRTMIAEVPTMAVDLVTIHENTTVLHDEYIAHRIGLIPLSSSAADGYVYSRDCVACDDFCGVCSVSYTLSVTNATDDDV-PVTSRDLVPAEVSPDAPQGDPVVPVHDSGDVLRDAAPSPSSPTGTVPASVSDAAAKGILIVKLARGQRLSFSAIAKKGIGKEHAKWSPVCTVAFRAEPPAVRFVLPRLNELLDAAAKADLLSLSLGVVALDAAGDLEYDGPFLAGRSAITADAVRRAGELAAAAGGAESEIVEFCEFPERFEFDIETTGVLPPTEVLTRAITVLREKVQNVSAHL 329          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A7S1ERC4 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERC4_9RHOD)

HSP 1 Score: 246 bits (628), Expect = 8.340e-77
Identity = 136/305 (44.59%), Postives = 195/305 (63.93%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDDTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRVS--NNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNP---ERFDFNAETTGAMTPNSALLMALDLLKKRV 300
            MP  R   LEV+      + FSL  +D S+ANA+RR MI+EVPT+AI+LV+V  N+S LHDE+I HRLGLIPL S  V+ F+Y ++C+ CD+ C+ C V F + +H   S    +VT+  L   +    + C  V PIH  G++   G+GI+IA+L   Q++ +H +ARKGIGK+HAKWSP+ T +YR     V L L++LN++L+  AK++L K+S G L +   ++ L+YEE F+ GR  I+ D  RR GEL+ +AG   SEV+  ++N     RFDF  E+TGA TP   L  AL +L +R+
Sbjct:    1 MPNARFSALEVESVTSDEIRFSLNKSDASVANALRRVMIAEVPTLAIELVSVSFNSSPLHDEFIVHRLGLIPLNSNRVDAFNYAYECD-CDELCAKCCVEFSIDIHSVDSD--MSVTTHHLVNESKYLSEDCASVVPIH--GEELGDGSGIIIAKLKQGQKLKLHAIARKGIGKEHAKWSPVATATYRS-EAGVNLKLDRLNAVLDFNAKSELVKWSDGALTMDRRSDKLEYEEAFVLGRTSISADLVRRCGELLLDAGSHISEVLVVSANDGSGARFDFVVESTGARTPQDILRAALLILLERI 299          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A5J4YZ21 (DNA-directed RNA polymerases II, IV and V subunit 3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ21_PORPP)

HSP 1 Score: 235 bits (600), Expect = 2.130e-71
Identity = 133/315 (42.22%), Postives = 194/315 (61.59%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDW--CHEVKPIH--------DSGDDTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLR--VSNNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNV 303
            MP  R P LE+ E     + F L+ TD S+ANA+RR MI+EVPT+AIDLV +  N+S LHDE+IAHRLG+IPL S+     +Y  DCE C+D+C  C+V F + V     G   TVTS+ L     + D +     V+P+H        D   D  S +GI+IA+L + QRI +  +ARKGIGK+HAKWSP+ TVSY+   P V L L++LN+ LE   + +L K+S G L+     N L+Y++ F  GR  ++ D  R+ GE++ + G  PSEVI  N++P RF+F  E+TGA++    ++ A+ +L+ ++  +
Sbjct:   88 MPNARFPTLELSECTDESLKFVLSRTDASVANALRRVMIAEVPTIAIDLVNISFNSSPLHDEFIAHRLGMIPLVSDKAADMNYTRDCE-CEDFCDLCAVVFQMDVEGQVEGT--TVTSQHLQNVWFDPDTYPRASTVEPVHWSCGAEHPDPALDA-SASGIIIAKLKAGQRIKLEAIARKGIGKEHAKWSPVATVSYKS-EPVVSLRLDELNNRLEVAQRQELLKWSDGALKWDARTNKLEYDDAFKYGRTALSNDFVRKCGEMLVQVGSHPSEVILLNNDPSRFEFFVESTGAISAPVVVVNAISVLRNKLQEL 397          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A7S2ZVX0 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZVX0_9RHOD)

HSP 1 Score: 232 bits (592), Expect = 4.120e-71
Identity = 128/324 (39.51%), Postives = 191/324 (58.95%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDD-----------TDSGN----GILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRVS--NNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNVMAHI 307
            MP  R P+++++      M F+L   + S+ANA+RR MI+EVPTMAIDLV ++ NTS L DE++AHRLGLIPL S  V++F+   DC++C D+C  CS+ ++L V    + +   V SKDL     +    C  VKP+ +SG+            +D G     GI+I +L   QRI   C+A+KG GK+HAKWS   TV +R   P+V   L+K+N  L    K DL KYS+G+L  +   + L+YEE F + R  I+ DT ++AG+L    G  P E++ YN NP  F+F  ETTG +T       A+++L  +++++  ++
Sbjct:    1 MPNARLPDIKLERVTSSEMDFTLLNAETSIANALRRVMIAEVPTMAIDLVNMEVNTSPLFDEFVAHRLGLIPLSSHEVDQFNNTRDCDRCTDHCPYCSIEYVLDVSCD-NEDFLDVMSKDLINVYEKERPECASVKPVDNSGESEAHARMNQASKSDGGQRPPEGIVITKLRRGQRIKCTCIAKKGTGKEHAKWSAASTVRFR-TDPSVRFRLDKINDTLTKDEKIDLEKYSEGMLMYNPTTDALEYEECFQERRFAISTDTIKKAGDLAGLHGVHPHEIMVYNDNPTVFNFKCETTGVLTAKELFFKAIEVLMNKLNSIQGYL 322          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A7S1TMT8 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMT8_9RHOD)

HSP 1 Score: 218 bits (554), Expect = 1.480e-65
Identity = 126/314 (40.13%), Postives = 188/314 (59.87%), Query Frame = 0
Query:    5 RQPNLEVKETNRF--HMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGD-----DTDSGN--GILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQG--LLRVSNNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNS--NPERFDFNAETTGAMTPNSALLMALDLLKKRVDNVMA 305
            R P+L+V E +     + F+LT TD S+ANA+RR MI+EVPT+AIDLV++  N+SALHDE++AHRLG+IPL+SE      Y  DC+ CD++C  C+  + L V    +     VTS+ L     E+     E+ P+HD+         D G    ILIA+L   QR+D+ C+ARKG+GK+HAKW P+ T S+R  P AV L L++LN +L+  AK ++A +S G  +LR   ++L+++  F+ GR  I+ D  RR GEL+ +     SEV+   +      FDF  E+TG ++    L  A+ +L  ++  + A
Sbjct:    6 RFPSLQVAELSADGRELRFALTRTDASVANALRRVMIAEVPTIAIDLVSISVNSSALHDEFLAHRLGMIPLFSERAVSMRYARDCD-CDEFCPQCAAMYRLAVSCSAAETELAVTSRHLEPVWPES----AEILPVHDASTAPTRLSVDGGERAAILIAKLRPGQRLDMTCIARKGLGKEHAKWIPVATASFRGAP-AVSLKLDRLNVLLDRAAKAEVAAWSDGALMLRRERDVLEFDPAFVAGRTSISADLVRRVGELLLDVNAHVSEVVEVGAADGGSSFDFVVESTGVLSAPDILRAAIRVLMDKLQGIDA 313          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A7S3EGI7 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EGI7_9RHOD)

HSP 1 Score: 216 bits (549), Expect = 1.280e-64
Identity = 122/297 (41.08%), Postives = 175/297 (58.92%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDD-----------TDSGN----GILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRVS--NNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETT 280
            MP  R P+++++      M F+L   + S+ANA+RR MI+EVPTMAIDLV ++ NTS L DE++AHRLGLIPL S  V++F+   DC++C D+C  CS+ ++L V    + +   V SKDL     +    C  VKP+ +SG+            +D G     GI+I +L   QRI   C+A+KG GK+HAKWS   TV +R   P+V   L+K+N  L    K DL KYS+G+L  +   + L+YEE F + R  I+ DT ++AG+L    G  P E++ YN NP  F+F  E +
Sbjct:    1 MPNARLPDIKLERVTSSEMDFTLLNAETSIANALRRVMIAEVPTMAIDLVNMEVNTSPLFDEFVAHRLGLIPLSSHEVDQFNNTRDCDRCTDHCPYCSIEYVLDVSCD-NEDFLDVMSKDLINVYEKERPECASVKPVDNSGESEAHARMNQASKSDGGQRPPEGIVITKLRRGQRIKCTCIAKKGTGKEHAKWSAASTVRFR-TDPSVRFRLDKINDTLTKDEKIDLEKYSEGMLMYNPTTDALEYEECFQERRFAISTDTIKKAGDLAGLHGVHPHEIMVYNDNPTVFNFKCEVS 295          
BLAST of Ggra5592.t1 vs. uniprot
Match: M2XXQ9 (DNA-directed RNA polymerase II subunit C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XXQ9_GALSU)

HSP 1 Score: 210 bits (535), Expect = 1.260e-63
Identity = 113/256 (44.14%), Postives = 159/256 (62.11%), Query Frame = 0
Query:    1 MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGD------DTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRVS--NNILQYEEPFLKGRIGITPDTTRR 248
            MPF + P + +       M F +T TD S+ANAIRR  I++VPTMAIDL+ ++ NTS+LHDE +AHRLGLIPL S  V+ F+Y  DC  C D+C +CSV+F L V    +    TVTS+DL   +A        V+P+H SG+      + +  NGI++A+L+  QRI +  +A+KG+GK+HAKWSP+CT+SY+   P+V+  L KLN++L   AK  L K S   L +   +N L YE  F  GRI +  D  ++
Sbjct:    1 MPFAKTPTIHINRQTFNEMDFIITDTDTSVANAIRRVAIAQVPTMAIDLIHMQVNTSSLHDELLAHRLGLIPLTSHRVDEFEYTRDCPYCSDHCLHCSVTFELDVQC--TEEAMTVTSQDLVNKSAHESQLAASVQPVHFSGEYNPTLSEENGLNGIVLAKLAKGQRIQLTAIAKKGVGKEHAKWSPVCTISYQ-TDPSVQFNLNKLNTLLSEEAKRALVKSSDECLAIDPKSNQLIYETAFTLGRISLPLDCVKK 253          
BLAST of Ggra5592.t1 vs. uniprot
Match: A0A1R2BMG1 (RPOLD domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BMG1_9CILI)

HSP 1 Score: 191 bits (484), Expect = 2.030e-55
Identity = 112/307 (36.48%), Postives = 179/307 (58.31%), Query Frame = 0
Query:    4 GRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDDTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILE--KLNSMLENGAKNDLAKYSQG-LLRVSNNILQYEEPFLKGRIGITPDTTRRAGELITEAG----GKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNV 303
             R P +E+++ ++  M F+L+G D S+AN++RRTMI+EVPTMAIDLV ++ NTS+LHDE+IAHRLGLIPL SEN++ +++  +C+ C  +C  C+V F L+V     G V  VTS DL           +EV+P        D    IL+ +L  +Q IDI C ARKGIGK+HAKWSP+ T S++  P   E+IL   K+ ++++   K D        +  ++ + ++  +P    +     +  R+   +IT++          ++R N   ++F F  E++GA+ P S L+ A  LL  +++++
Sbjct:    7 NRTPGIEIQKLSKEKMKFTLSGVDSSIANSLRRTMIAEVPTMAIDLVQIQINTSSLHDEFIAHRLGLIPLVSENIDEYEFPRNCK-CSGHCQCCAVQFRLKVK-NSEGGVLDVTSMDLR----RVSQSANEVRPA-------DIDGPILLLKLKKNQEIDITCNARKGIGKEHAKWSPVATCSFKYTP---EIILNTPKIETLMDLKDKQDFVNSCPAKVFNLNEDNIEIVKP---NKCMFCDECVRKGESMITKSSIAILNSLENIVRINQIKDKFVFKVESSGALKPESILMKAFTLLCTKLEDI 294          
BLAST of Ggra5592.t1 vs. uniprot
Match: J7GAM7 (DNA-directed RNA polymerase II n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7GAM7_9CRYP)

HSP 1 Score: 191 bits (484), Expect = 2.280e-55
Identity = 113/302 (37.42%), Postives = 175/302 (57.95%), Query Frame = 0
Query:    9 LEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLVTVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVSFMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGD-DTDSGNGILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEKLNSMLENGAKNDLAKYSQGLLRV--SNNILQYEEPFLKGRIGITPDTTRRAGELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRVDNVMAHI 307
            L +   + F    SL   D+S+ N++RR MI+E+PTMAIDL+ V+ N+S  HDE++AHRLGLIPL+SE+ N+F Y  +CE C+ +CS CSV+F L V        R V S DL   N +   +   V PIHDSG  D      ILI++LS  QR+ +  +A+KGIG +HAKWSP+  +  +     + + +  LN M E   K++L K    +L+   SN  L Y E   K +  ++  T+++  + + +    P +VI+ N +   F+   E+TGA+ P+     A+D+LKK+++ +  H+
Sbjct:    6 LTIDSISNFETKISLKEIDISLINSLRRVMINEIPTMAIDLIFVEINSSIFHDEFLAHRLGLIPLFSESANQFRYTRECE-CEKFCSKCSVAFSLDVIA--KDKYRDVFSTDLIVLNPKESFFAKHVSPIHDSGTADFPRLEPILISKLSQGQRLKLIGVAKKGIGLEHAKWSPISIIRLKR-QNTIYININDLNFMTETKIKHELVKNFPEILKQNDSNQNLVYHE---KKKFSLSVLTSQKLIDFLIKKKIDPKKVIKINPDKINFEIYIESTGALKPDFIFQNAIDILKKKINIIGIHV 300          
The following BLAST results are available for this feature:
BLAST of Ggra5592.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDF81.090e-18278.34DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A1X6PC394.120e-8846.36RPOLD domain-containing protein n=1 Tax=Porphyra u... [more]
A0A7S1ERC48.340e-7744.59Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YZ212.130e-7142.22DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A7S2ZVX04.120e-7139.51Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TMT81.480e-6540.13Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S3EGI71.280e-6441.08Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2XXQ91.260e-6344.14DNA-directed RNA polymerase II subunit C n=1 Tax=G... [more]
A0A1R2BMG12.030e-5536.48RPOLD domain-containing protein n=1 Tax=Stentor co... [more]
J7GAM72.280e-5537.42DNA-directed RNA polymerase II n=1 Tax=Chroomonas ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 18..306
e-value: 2.3E-53
score: 193.3
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 20..298
e-value: 3.3E-17
score: 62.6
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 11..302
e-value: 2.7E-66
score: 225.7
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 6..304
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 50..180
e-value: 1.0E-25
score: 90.3
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 44..177
e-value: 2.7E-66
score: 225.7
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 43..181
NoneNo IPR availablePANTHERPTHR11800:SF2DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3coord: 1..305
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 1..305
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 32..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1058151..1059077 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5592.t1Ggra5592.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1058151..1059077 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5592.t1 ID=Ggra5592.t1|Name=Ggra5592.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MPFGRQPNLEVKETNRFHMSFSLTGTDVSMANAIRRTMISEVPTMAIDLV
TVKENTSALHDEYIAHRLGLIPLYSENVNRFDYGFDCEQCDDYCSNCSVS
FMLQVHVPPSGNVRTVTSKDLTCSNAETDDWCHEVKPIHDSGDDTDSGNG
ILIARLSSSQRIDIHCLARKGIGKDHAKWSPMCTVSYRIVPPAVELILEK
LNSMLENGAKNDLAKYSQGLLRVSNNILQYEEPFLKGRIGITPDTTRRAG
ELITEAGGKPSEVIRYNSNPERFDFNAETTGAMTPNSALLMALDLLKKRV
DNVMAHIH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036603RBP11-like
IPR011262DNA-dir_RNA_pol_insert
IPR036643RNApol_insert_sf
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS