Ggra5572.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5572.t1
Unique NameGgra5572.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Homology
BLAST of Ggra5572.t1 vs. uniprot
Match: A0A1X6P1X1 (PSII 6.1 kDa protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1X1_PORUM)

HSP 1 Score: 95.9 bits (237), Expect = 1.350e-23
Identity = 64/112 (57.14%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    1 MVSAFVPTISLPLASRPVAAAKSTRRAPHMSLR-------KHAARLAALPATLAAVAPTLATEGTGEGLGIDSPLFFLPLLGIPAVFLILYLQFDGSQSKEDFLGEYDQRRN 105
            M SAFV T  L LAS   AAA +T  AP M++        + +A LAAL AT    AP LATEGTGEGLGID+ L ++PLLGIPAVFL L+LQF  SQ  EDF G  D RRN
Sbjct:    1 MNSAFVATSPLLLASPRRAAATAT--APRMAVAPVXXXXAQASASLAALAAT---AAPVLATEGTGEGLGIDNALLYVPLLGIPAVFLFLFLQFGSSQDNEDFFGTIDDRRN 107          
BLAST of Ggra5572.t1 vs. uniprot
Match: M2W548 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W548_GALSU)

HSP 1 Score: 62.4 bits (150), Expect = 6.350e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0
Query:   53 LATEGTGEGLGIDSPLFFLPLLGIPAVFLILYLQFDGSQSKEDFLGEYDQRR 104
            LATEGTGE LG+D P   + L  IP +  +L+LQF+G QS +DF+  YDQRR
Sbjct:  111 LATEGTGEPLGVDDPRVLVVLTIIPILVFLLWLQFNGQQSNDDFMDTYDQRR 162          
BLAST of Ggra5572.t1 vs. uniprot
Match: A0A835ZAY3 (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-8
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0
Query:   18 VAAAKSTRRAP---HMSLRKHAARLAALPATLAAVAPTLATEGTGEGLGIDSPL-FFLPLLGIPAVFLILYLQFDGSQSKEDFLGEYDQRR 104
            VA A  T RA     MS       +A   A L   AP LATEGT E  GIDSPL F+LPL  I  + LI + Q+  +Q + +F GEYD+RR
Sbjct:   22 VAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFF-QWARTQPEGEFFGEYDERR 111          
BLAST of Ggra5572.t1 vs. uniprot
Match: A0A0G4F681 (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4F681_VITBC)

HSP 1 Score: 54.3 bits (129), Expect = 4.210e-7
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 0
Query:    3 SAFVPTISLPLASRPVAAAKSTRRAPHMSLRKHAARLAALPATLAAVAPTLATEGTGEGLGIDSPLFFLPLLGIPAVFLILYLQF--DGSQSKEDFLGEYDQR 103
            +A+VPT  L L +R  A +     A    L K+     A+   LA +A  LATEGTGE LG+DSPL  L +  IP    IL++ +  +   ++ DF  EYD+R
Sbjct:   25 AAYVPTNPLLLRARRQAPSPLRMSAETDKLSKNLGAALAVSPLLAPLA-ALATEGTGEPLGVDSPLQLLAITAIPLSLGILFINWSKENPDNEGDFFSEYDRR 126          
The following BLAST results are available for this feature:
BLAST of Ggra5572.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1X6P1X11.350e-2357.14PSII 6.1 kDa protein n=1 Tax=Porphyra umbilicalis ... [more]
M2W5486.350e-1055.77Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A835ZAY31.370e-846.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F6814.210e-738.83Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..87
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 68..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:988073..988390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5572.t1Ggra5572.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 988073..988390 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5572.t1 ID=Ggra5572.t1|Name=Ggra5572.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MVSAFVPTISLPLASRPVAAAKSTRRAPHMSLRKHAARLAALPATLAAVA
PTLATEGTGEGLGIDSPLFFLPLLGIPAVFLILYLQFDGSQSKEDFLGEY
DQRRN*
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