Ggra5568.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5568.t1
Unique NameGgra5568.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length762
Homology
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A2V3IVB2 (Bromodomain-containing protein 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVB2_9FLOR)

HSP 1 Score: 420 bits (1080), Expect = 1.950e-132
Identity = 303/792 (38.26%), Postives = 425/792 (53.66%), Query Frame = 0
Query:    1 MSSSAPSPTQTPTQIFAHLMATGAIDRFRKSLEKLIQPLSQARHQSISKATDSFLNDLISADDIISNPKQLLTDAKHATMTSVREDVIKDVQQTAVSEAADEFRRALRHAFDSIISPPKERSEPTAQRTETSPPQAQSTREEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSHALQQSERSPI-----QEADFGVRNSPSITNQSASLEDNTSPT-IQTIPTDLFQTAHDILELKAKEKEAKASLA------------VEKSS-------KGESTQTQAAEERSSPLRNDAVTPELGCGPTPKPSGDHPEPSEDHEGVTTRSIDSRNSRKGLDIEEQAKMQEGDPTNDGGIDQVPSQTPETSVSKDFGRETKATKLSREMQSDAKE-LEVDSNVEAIDVKVLEDNDIETPKTPPRRGRKRRKPPAKLVVADIGTRKRRXXSQVPQDAVVDSEXXXXXXKRGRKETESAPS--KRPRKARIRHESVANLETKRMSEKRSGRKRGKGSEIGLNPAVAALIDPENPNRPRGYEVSEPSCIPEDYEVQARVLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMTSCRDELSNQVKRFVLSGENGKTTQGPSATDQKTDMIHDERRE-ENSEADHAASNTRRKQGVNRNKEDP--EDLNNGQLLGKQGVIFRYVEGQKGGKRKEWSLCTVTEYDGANKSYTLLWADE-SETRNATIGAGCMFNIHRFRT 760
            MS+S   P  +P+QIF  LMA GAIDRFRKSLEKL+ PLS+ARHQS+SKAT SFL++L S+   + +PK LL  A+HATM SVRE VI DVQ+ AVS  A + R +LR AFD I+ P ++R  P  ++  T P  +    +  +                                           +QS+ SP+     Q+   G+  S S ++   S E    P  +Q+IPTDLFQTAH IL+  +KEK  K  LA            ++KS        + ES  ++   E+    + +    + G       +G   E  E+  G    S   ++ +K  +  E   + EG   N     ++ S+  +   +K    E +   L  + + D+K     D  V+ +D K  +  D +  +   + GR RRK  +K    D   +KRR  S+   +   ++E      K  R E ESA +  K+PR+ + R+ +      ++++EK + +KR K  E     +++ L+DP NPNRPRGY V+ P C+PEDY+ Q +VLQ+LENLLE + +  F+EPVD G+EG S+YLREI NPMDLGTI KRL+EG+  R +FK V EV+ADIELVWWNC  FNG FDPVV DM  C+ ELS Q ++F   G   K  +    T +  +       E E++E     ++     G  RN+  P   DLN+GQLLGK G+IFRYV     G RK WS C+V +Y+ +N+SYT+ W D+ S T NAT+G GCMFNIHRFRT
Sbjct:    1 MSTSPQQPPSSPSQIFDQLMANGAIDRFRKSLEKLMFPLSKARHQSVSKATHSFLHNLPSSSTSLPDPKLLLQQAQHATMGSVREAVINDVQRIAVSAQAADLRNSLRRAFDQIVHPRRDR--PVGEKRVTEPCDSMPNEQNKTTSAITPSHSAKLPDVDRPVASDTQVPASVE--------QKSQSKQSKLSPLPPPRQQKVPLGINPSNSESSAQQSKEQRREPADMQSIPTDLFQTAHRILQ--SKEKAQKEGLASAHQGEANETPQIDKSEVRSEGEHENESVHSKLVVEQEQTSKRERTKQDKGLMEYKSGAGARKEEQENL-GNQNHSSAEKDQQKFENHNES--ITEGQTRNVNYNTRLSSKATKKYGAKKSVDEKQTRALEHDTEKDSKHPSRADDMVKKLDTKSSQVIDSKDERGSKKEGRGRRKAQSKPAELDTTIKKRRKKSRRGDNDNFEAEEAPGS-KPERYEPESAGNTEKKPRRKQGRNTASRKKNVEQVTEKATPKKRAKPVEETHTSSLSPLVDPRNPNRPRGYRVTAPFCVPEDYDEQLKVLQVLENLLEKEFADPFSEPVDPGEEGCSAYLREIANPMDLGTIVKRLKEGSEERGYFKTVQEVIADIELVWWNCTAFNGAFDPVVFDMDRCKLELSLQFEQFEQFGVTCKQPRKQRRTPKTRNRYRGYSAEKESTEVGVLKNSVSTSDGEQRNQFPPPESDLNDGQLLGKHGLIFRYVAIADVG-RKVWSSCSVADYNASNRSYTIKWDDDGSTTENATLGPGCMFNIHRFRT 775          
BLAST of Ggra5568.t1 vs. uniprot
Match: W6KVQ6 (Bromo domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KVQ6_9TRYP)

HSP 1 Score: 71.2 bits (173), Expect = 3.410e-10
Identity = 39/134 (29.10%), Postives = 68/134 (50.75%), Query Frame = 0
Query:  500 ALIDPENPNRPRGYEVSEPSCIPEDYEVQARVLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMTSCRDELSNQVKRF 633
            A+  P  P+    Y  S  S +PE  ++   + ++     E   S +F EPV+  + G  +Y + ++ P+ L  +  R+ EG    +++    +VL DIEL+W NCA+FNG   P++++   C   L    +RF
Sbjct:   26 AMQHPILPSGSHAYH-SHLSTVPEIRDLYHCIYKLY---TEESSSLNFREPVNALETGAFNYYQVVEQPLSLREVLDRMAEG----NYYSTAEQVLQDIELIWTNCAKFNGPTSPLMEEAKKCAAALERIQQRF 151          
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A7S4F2T3 (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F2T3_CHRCT)

HSP 1 Score: 73.9 bits (180), Expect = 5.620e-10
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0
Query:  531 VLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNG 610
            V Q+L++LL H  S  F EPVD    G  +Y + +  PMDLGTIA++L EG      +  V ++ ADIELVW NC +FNG
Sbjct:  158 VRQLLKSLLTHASSKPFREPVDYMKLGLFTYPQIVTQPMDLGTIARKLEEGA-----YATVKQLRADIELVWENCIKFNG 232          
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A2P6TME4 (DNA-binding bromodomain-containing n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TME4_CHLSO)

HSP 1 Score: 72.8 bits (177), Expect = 2.020e-9
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 0
Query:  529 ARVLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPR---RSFFKNVNEVLADIELVWWNCARFNGQFDPV 615
            +R L +LE LL+H+ +  F++PVD    G   Y + I +PMDLGTI  +L  G         +K+ +EVLAD++LVW NC R+N    P+
Sbjct:  546 SRCLVVLERLLQHEDAEPFSQPVDPEALGIPDYPQVITSPMDLGTIRGKLAPGHTEGWGMVAYKSTDEVLADVQLVWTNCRRYNAAGSPI 635          
BLAST of Ggra5568.t1 vs. uniprot
Match: C4M1L3 (Bromodomain protein, putative n=8 Tax=Entamoeba TaxID=5758 RepID=C4M1L3_ENTHI)

HSP 1 Score: 70.1 bits (170), Expect = 5.370e-9
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 0
Query:  533 QILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFN 609
            ++L +LL +  S +F EPVD    G  +Y   IK+PMDLGTI  +L++ T     +KNVNEVL+DI+LVW N  ++N
Sbjct:  295 KLLSSLLRNKASFAFKEPVDPQLTGAINYFDIIKHPMDLGTIKNKLKDKT-----YKNVNEVLSDIDLVWNNAFKYN 366          
BLAST of Ggra5568.t1 vs. uniprot
Match: S9U4M1 (Bromo domain-containing protein n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9U4M1_9TRYP)

HSP 1 Score: 67.4 bits (163), Expect = 6.540e-9
Identity = 41/134 (30.60%), Postives = 62/134 (46.27%), Query Frame = 0
Query:  500 ALIDPENPNRPRGYEVSEPSCIPEDYEVQARVLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMTSCRDELSNQVKRF 633
            AL  P  P+    Y  S  S +PE  ++   + ++     EH CS +F EPV+    G   Y   I  PM L T+  R+  G      +    +VL D++L+W NCA+FNG    +  +  SC   L +  + F
Sbjct:   22 ALHHPHLPSGRHSYNASL-STVPEVRDLYHSLYKLYS---EHSCSVNFREPVNALQLGALHYYDVITEPMSLRTVLDRIAAG----GHYTTTAQVLRDVDLIWSNCAKFNGGDSVITAEARSCAKTLQSLRQAF 147          
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A1Y2G7F8 (Transcription initiation factor TFIID subunit 2 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G7F8_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 7.230e-9
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 0
Query:  533 QILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMTSCRDELSNQVKRFVLSGENGKTTQGPSAT 649
            +IL+ L+   C+  F +PVD   +G   YL+ I +PMDLGTI ++L+        +KN NEV  DIELV +NC +FN +   VV    +    +  + +     G++  T QG  +T
Sbjct: 1690 KILKKLMADPCAFEFLQPVDPIRQGIPQYLKIISHPMDLGTIQQKLKMDE-----YKNANEVRDDIELVIFNCRKFNPRGTYVVNQADALEKLMIAEWESAFGPGDDNNTRQGVEST 1801          
BLAST of Ggra5568.t1 vs. uniprot
Match: A2DRA3 (Bromodomain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DRA3_TRIVA)

HSP 1 Score: 66.2 bits (160), Expect = 2.060e-8
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  532 LQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMTSCRDELSNQVKRFVLSG 637
            + ++  LL++  S  FA PVD   +   +YL+ IK PMDLGT+ KRL  G     ++K V++   D++L+W N   FN + +  +  +T    E  NQ+  ++  G
Sbjct:    9 INVINELLKYSISAMFANPVDPERDRCPNYLQLIKEPMDLGTVKKRLESG-----YYKTVSDWRHDMDLIWNNSYTFN-KVNSFIGLITKDLQEKYNQISEYINDG 108          
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A7S1SM34 (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SM34_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 5.290e-8
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  529 ARVLQILENLLEHDCSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPR---RSFFKNVNEVLADIELVWWNCARFNGQFDPVV 616
            AR+L ++E LLEH  S  FA PV    E    Y   +K PMDLGTIA RLR G         +K++ +VL D+  VW NC  +N    P++
Sbjct:  201 ARILLVIEKLLEHPDSPPFASPVTA--EVAPDYDSYVKTPMDLGTIADRLRPGLKSGWGTVTYKSILDVLTDVAQVWKNCHTYNEDTAPII 289          
BLAST of Ggra5568.t1 vs. uniprot
Match: A0A7S1XCY0 (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XCY0_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 5.580e-8
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0
Query:  526 EVQARVLQILENLLEHD-CSTSFAEPVDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIELVWWNCARFNGQFDPVVQDMT 620
            E +  +L+ L +++ H+     F EPVD    G   Y +EIK PMDLGT+ K++         ++ V+EV  D+ LVW NC +FN +   V +  T
Sbjct:  111 EAKDTILKTLRDIMTHEYADLYFNEPVDAEALGIPEYYKEIKRPMDLGTVTKKVLNNE-----YREVHEVYDDVRLVWRNCLKFNEEGSEVSRACT 201          
The following BLAST results are available for this feature:
BLAST of Ggra5568.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVB21.950e-13238.26Bromodomain-containing protein 4 n=1 Tax=Gracilari... [more]
W6KVQ63.410e-1029.10Bromo domain-containing protein n=1 Tax=Phytomonas... [more]
A0A7S4F2T35.620e-1047.50Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A2P6TME42.020e-941.11DNA-binding bromodomain-containing n=1 Tax=Chlorel... [more]
C4M1L35.370e-946.75Bromodomain protein, putative n=8 Tax=Entamoeba Ta... [more]
S9U4M16.540e-930.60Bromo domain-containing protein n=1 Tax=Strigomona... [more]
A0A1Y2G7F87.230e-935.04Transcription initiation factor TFIID subunit 2 n=... [more]
A2DRA32.060e-833.02Bromodomain containing protein n=1 Tax=Trichomonas... [more]
A0A7S1SM345.290e-841.76Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S1XCY05.580e-835.42Hypothetical protein (Fragment) n=2 Tax=Tetraselmi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainSMARTSM00297bromo_6coord: 521..635
e-value: 8.1E-10
score: 48.6
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 532..620
e-value: 9.5E-15
score: 54.5
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 539..616
score: 12.9266
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 523..643
e-value: 1.2E-21
score: 78.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 527..632
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 633..693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..458
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..509
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 633..651
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..488
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 652..691
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 352..399
NoneNo IPR availablePANTHERPTHR22880FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINScoord: 409..674
NoneNo IPR availableCDDcd04369Bromodomaincoord: 530..630
e-value: 2.60624E-17
score: 75.8718

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:977407..979692 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5568.t1Ggra5568.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 977407..979692 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5568.t1 ID=Ggra5568.t1|Name=Ggra5568.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=762bp
MSSSAPSPTQTPTQIFAHLMATGAIDRFRKSLEKLIQPLSQARHQSISKA
TDSFLNDLISADDIISNPKQLLTDAKHATMTSVREDVIKDVQQTAVSEAA
DEFRRALRHAFDSIISPPKERSEPTAQRTETSPPQAQSTREEPSEPAKPS
SSSTEKETITEQQSTVEAPKQTMPMDSQTSKANSHALQQSERSPIQEADF
GVRNSPSITNQSASLEDNTSPTIQTIPTDLFQTAHDILELKAKEKEAKAS
LAVEKSSKGESTQTQAAEERSSPLRNDAVTPELGCGPTPKPSGDHPEPSE
DHEGVTTRSIDSRNSRKGLDIEEQAKMQEGDPTNDGGIDQVPSQTPETSV
SKDFGRETKATKLSREMQSDAKELEVDSNVEAIDVKVLEDNDIETPKTPP
RRGRKRRKPPAKLVVADIGTRKRRRKSQVPQDAVVDSEEGTGKRKRGRKE
TESAPSKRPRKARIRHESVANLETKRMSEKRSGRKRGKGSEIGLNPAVAA
LIDPENPNRPRGYEVSEPSCIPEDYEVQARVLQILENLLEHDCSTSFAEP
VDLGDEGQSSYLREIKNPMDLGTIAKRLREGTPRRSFFKNVNEVLADIEL
VWWNCARFNGQFDPVVQDMTSCRDELSNQVKRFVLSGENGKTTQGPSATD
QKTDMIHDERREENSEADHAASNTRRKQGVNRNKEDPEDLNNGQLLGKQG
VIFRYVEGQKGGKRKEWSLCTVTEYDGANKSYTLLWADESETRNATIGAG
CMFNIHRFRTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf