Ggra5545.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5545.t1
Unique NameGgra5545.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Homology
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A2V3IKJ4 (DEAD-box ATP-dependent RNA helicase 39 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKJ4_9FLOR)

HSP 1 Score: 394 bits (1013), Expect = 7.100e-132
Identity = 203/322 (63.04%), Postives = 240/322 (74.53%), Query Frame = 0
Query:   21 RSRKRLRNSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQVCVAMAYQGYRKGIQ--------------------------------YVLAGRREQAIAEELFLSHVKGLPIAGVSPQKAWKEYTNAGRDRIATDKVMRTARSKRQARWVDERLKADGTFRGRKRQLMI 310
            R+RK LR SPVDL +GTPGS+  MR +QLLY+SRVSTIVLDEADELVS  AGFG QL GLMS LRE++A FV + ATVP  ME  L+RWH GN+EV   S+LHRAT S RVKTTF+RVDG+EDAKL+KLI++FSVA+ R  +GK+LIFCDNV+R +AI++ LR++GTDVVHLSGEGRD+DDR  DW AF  GQV VA+  + + +GI                                 Y+L  RREQ IAE+LFL+HVKGLPIAGVSPQKAWK YT AGRDRIATDKV++ ARSKR ARWVDER  ADGTFRGRKRQ+ +
Sbjct:  167 RARKLLRESPVDLFVGTPGSVATMREQQLLYISRVSTIVLDEADELVSPAAGFGDQLAGLMSTLRERNAHFVYAAATVPTAMETGLQRWHDGNIEVVRSSKLHRATPSSRVKTTFVRVDGAEDAKLRKLIDIFSVAKHRANSGKVLIFCDNVQRREAIMQTLRARGTDVVHLSGEGRDRDDRYTDWNAFVDGQVSVAVCSKSFGRGIDDHQIRTVIMFDVPMTGSEYLHRIGRIRGTGRAYILVSRREQPIAEDLFLAHVKGLPIAGVSPQKAWKGYTGAGRDRIATDKVVKIARSKRYARWVDERASADGTFRGRKRQISV 488          
BLAST of Ggra5545.t1 vs. uniprot
Match: R7Q761 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q761_CHOCR)

HSP 1 Score: 216 bits (550), Expect = 4.100e-62
Identity = 126/320 (39.38%), Postives = 187/320 (58.44%), Query Frame = 0
Query:   23 RKRLRNSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREK-DAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFS-VAQKRTKAGKILIFCDNVKRGQAIVRELRSK-GTDVVHLSGEGRDKDDRSADWEAF-----SSGQVCVAMAYQGYRKGIQ--------------------------------YVLAGRREQAIAEELFLSHVKGLPIAGVSPQKAWKEYTNAGRDRIATDKVMRTARSKRQARWVDERLKADGTFR 302
            ++ LR +PVD+++GTPG++  + +++L+Y+S+V  +V+DEAD L++   GF  Q   ++  L +K D QFV +GATVP ++ +E+ + H G LEV  G R H+A     +KTTFIRVDG E+AKL K +E+   V +++  A ++L+FCD  +R + +V  LR   G +VVHL G   D  DR  DW++F     +  Q  VA+  + + +G+                                 +VL G REQA+AE LFL HVKG  +  + P+ AWK YT AG+DRI T+ ++  AR K QARWVDER  A G+ R
Sbjct:  168 KRALREAPVDVLVGTPGAVNNLIDQKLIYLSKVQAVVVDEADALLAEKGGFADQTLPIVDSLGKKEDVQFVYAGATVPGSVREEIEKRHDG-LEVVKGKRFHKALGPADLKTTFIRVDGGEEAKLAKAVEIAGRVLRQKGGADRLLVFCDERERRERLVDLLREHVGENVVHLCGRN-DYQDRERDWDSFLGTKTNGEQTRVAVCAKSFGRGLDHHGIGTVLLVDVPWTGSEYLHRVGRIRGSGKAFVLVGNREQAVAEALFLGHVKGESLDSIQPRSAWKGYTTAGKDRITTEPMVNFARRKGQARWVDERPHAIGSAR 485          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A830HHH2 (Uncharacterized protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HHH2_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 3.030e-15
Identity = 73/220 (33.18%), Postives = 111/220 (50.45%), Query Frame = 0
Query:   23 RKRLRNSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSS---------GQVCVAMAYQG--YRKGIQYVL 231
            R  L  +PVDLVI TP  +  +  E+ L+   V T+VLDEAD LVS  AGF    T L+  +R  D + +   ATV   ++K L + +    + A    LHR   +   K TF+RV G +D KLQ L +  ++     K  ++L+FC+ V+  +A    L  +G +VV   GE   K +R+   EAF+            VC  +A +G  +R  + +V+
Sbjct:  187 RTVLARAPVDLVIATPKRLSDVHAEESLFFGDVKTVVLDEADTLVS--AGFNEVQT-LLERMRHPDRKSILVSATVTPAVQKLLAK-NFPQAKRAATKSLHRVPKN--AKHTFLRVPGDQD-KLQVLAD--TIRASHAKGNRVLVFCNTVQSCRAASHRLNEEGMNVVCHHGEV-PKSERARAVEAFARDGSEHEGPPAMVCTDLAARGLDFRADVDHVV 396          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A6P6UZ34 (DEAD-box ATP-dependent RNA helicase 39-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6UZ34_COFAR)

HSP 1 Score: 74.3 bits (181), Expect = 5.820e-11
Identity = 59/217 (27.19%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   28 NSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDA-------QFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQ------VCVAMAYQGYRKGIQYVL 231
            N+P+DLV+GTPG +     E  +    +  +VLDEAD +   + GFGP +   +  L+ + +       Q V   AT+   ++K +     G + +   S LH+  +S R    FI++ GSE+ KL+ L++V   +   +K  ++++FC+ +   +A+   L   G   V+  GE    ++R  + E F S        VC  +A +G    + +V+
Sbjct:  259 NTPIDLVVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMF--DRGFGPDIRKFLGPLKNRASKHDGLGFQTVLVSATMTKAVQKLVDEEFQGIVHLRT-STLHKKIASAR--HDFIKISGSEN-KLEALLQVLEPSL--SKGNRVMVFCNTLNSSRAVDHFLHENGISTVNYHGEV-PAEERVENLEKFKSEDGDCPTLVCTDLAARGLDLDVDHVI 466          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A068TXU1 (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068TXU1_COFCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-10
Identity = 58/217 (26.73%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   28 NSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDA-------QFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQ------VCVAMAYQGYRKGIQYVL 231
            N+P+DL++GTPG +     E  +    +  +VLDEAD +   + GFGP +   +  L+ + +       Q V   AT+   ++K +     G + +   S LH+  +S R    FI++ GSE+ KL+ L++V   +   +K  ++++FC+ +   +A+   L   G   V+  GE    ++R  + E F S        VC  +A +G    + +V+
Sbjct:  114 NTPIDLIVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMF--DRGFGPDIRKFLGPLKNRASKHDGLGFQTVLVSATMTKAVQKLVDEEFQGIVHLRT-STLHKKIASAR--HDFIKLSGSEN-KLEALLQVLEPSL--SKGNRVMVFCNTLNSSRAVDHFLHENGISTVNYHGEV-PAEERVENLEKFKSEDGDCPTLVCTDLAARGLDLDVDHVI 321          
BLAST of Ggra5545.t1 vs. uniprot
Match: DEAD-box ATP-dependent RNA helicase 39 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000901D223 (DEAD-box ATP-dependent RNA helicase 39 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000901D223)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-10
Identity = 60/217 (27.65%), Postives = 103/217 (47.47%), Query Frame = 0
Query:   28 NSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDAQFVDSG-------ATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQ------VCVAMAYQGYRKGIQYVL 231
            NSP+D+V+GTPG +     E  L    +  +VLDEAD +   + GFGP +   +  L+ + A+  D G       AT+   ++K +     G +E    S  H+  +S R    FIR+ GSE+ KL+ L++V   +   +K  ++++FC+ +   +A+   L       V+  GE    + R  + E F          VC  +A +G    + +V+
Sbjct:  248 NSPIDMVVGTPGRVLQHIEEGNLVYGDIRYVVLDEADTMF--DRGFGPDIRKFLRPLKTRAAKVDDQGFQTVLVTATMTKAVQKLVDEEFQG-IEHLRTSSFHKKIASAR--HDFIRLSGSEN-KLEALLQVLEPSL--SKGNRVMVFCNTLNSSRAVDHFLTENQISTVNYHGEV-PAEQRVENLEKFKRDDGDCPTLVCTDLAARGLDLDVDHVI 455          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A662WUR3 (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUR3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.170e-10
Identity = 52/172 (30.23%), Postives = 89/172 (51.74%), Query Frame = 0
Query:   31 VDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVL------REKDAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKG-TDVVHLSGE 195
            +DLVIGTPG +    ++   +VSR++T+V+DEAD L     GF  +L  ++  +      R +  Q + + AT+   +++ L++  G  L      ++HR  S++R +  F+RV    D+K   L E   + ++R  A K ++FC N    ++    LR  G  D V L G+
Sbjct:  198 LDLVIGTPGRVAKCISKGDFFVSRINTVVVDEADTLFDAKMGFRKELDAVLGPIQASAAKRNQPLQMILAAATIRPPLDQVLKKKFG-ELRTVSDDKIHRTPSTIREE--FVRV--MPDSKQSALREALQLHKRR--AAKTMVFCRNSASVRSTEHMLREHGFQDAVCLHGD 362          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A251THY7 (Putative RNA helicase, DEAD-box type, Q motif protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251THY7_HELAN)

HSP 1 Score: 72.0 bits (175), Expect = 3.310e-10
Identity = 61/224 (27.23%), Postives = 107/224 (47.77%), Query Frame = 0
Query:   21 RSRKRLRNSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREK-------DAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQ------VCVAMAYQGYRKGIQYVL 231
            R ++   NSP+D+V+GTPG +     E  L    +  +VLDEAD +   + GFGP +   +  L+ +       D Q V   AT+ + ++K +     G +E    S LH+  +S R    FI++ GSE+ KL+ L++V   +    K  ++++FC+ +   +A+   L       V+  GE     +R  + + F S        VC  +A +G    + +V+
Sbjct:  235 RPQEDALNSPIDMVVGTPGRVLQHIQEGNLVYGDIKYLVLDEADTMF--DRGFGPDIRKFLGPLKNRAQKADGLDFQTVLVSATMTNAVQKLVDEEFQG-IEHLRTSTLHKKVASAR--HDFIKLSGSEN-KLEALLQVLEPSL--AKGNRVMVFCNTLNSSRAVDHFLSENQLATVNYHGEV-PAVERVENLKKFKSNDGDCPTLVCTDLAARGLDLDVDHVI 449          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A4D9B415 (ATP-dependent RNA helicase DDX18/HAS1 n=6 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B415_SALSN)

HSP 1 Score: 72.0 bits (175), Expect = 3.320e-10
Identity = 59/217 (27.19%), Postives = 103/217 (47.47%), Query Frame = 0
Query:   28 NSPVDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDAQFVDSG-------ATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKDDRSADWEAFSSGQ------VCVAMAYQGYRKGIQYVL 231
            NSP+D+V+GTPG +     E  L    +  +VLDEAD +   + GFGP +   ++ LR + ++    G       AT+   ++K +     G   +   S LH+  +S R    FI++ GSE+ KL+ L++V   +    K  ++++FC+ +   +A+   L       V+  GE    + R  + E F S        VC  +A +G    + +V+
Sbjct:  257 NSPIDMVVGTPGRVLQHIEEGNLVYGGIRYVVLDEADTMF--DRGFGPDIRKFLAPLRSRASKLDGLGFQTVLVTATMTTAVQKLVDEEFQGIAHLRTSS-LHKKIASAR--HDFIKLSGSEN-KLEALLQVLEPSL--AKGNRVMVFCNTLSSSRAVDHFLSENQISTVNYHGE-IPAEQRVENLEKFKSNDGDCPTLVCTDLAARGLDLDVDHVI 464          
BLAST of Ggra5545.t1 vs. uniprot
Match: A0A2P4Y4S2 (DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4S2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.670e-10
Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 0
Query:   31 VDLVIGTPGSIEVMRNEQLLYVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVL------REKDAQFVDSGATVPHTMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLIEVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKG-TDVVHLSGE 195
            +DLVIGTPG +    ++   +VSR+ T+V+DEAD L     GF  +L  ++  +      R +  Q + + AT+   +++ L++  G  L V     +H+  SS+R +  F+RV+   ++K   L E   + ++R  A K +IFC N    ++    LR  G  D V L G+
Sbjct:  169 LDLVIGTPGRVAKCISKGDFFVSRIDTVVVDEADTLFDAKMGFRKELDAVLGPIQASAAKRNQPLQMILAAATIRSPIDQVLKKKFG-QLRVVSDDEIHKTPSSIREE--FVRVNP--ESKHSALREALHLHRRR--AAKTMIFCRNSASVRSTEHMLREHGFQDTVCLHGD 333          
The following BLAST results are available for this feature:
BLAST of Ggra5545.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKJ47.100e-13263.04DEAD-box ATP-dependent RNA helicase 39 n=1 Tax=Gra... [more]
R7Q7614.100e-6239.38Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A830HHH23.030e-1533.18Uncharacterized protein n=2 Tax=Pycnococcus provas... [more]
A0A6P6UZ345.820e-1127.19DEAD-box ATP-dependent RNA helicase 39-like n=3 Ta... [more]
A0A068TXU11.200e-1026.73Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
DEAD-box ATP-dependent RNA helicase 39 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000901D2231.410e-1027.65DEAD-box ATP-dependent RNA helicase 39 isoform X1 ... [more]
A0A662WUR32.170e-1030.23Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A251THY73.310e-1027.23Putative RNA helicase, DEAD-box type, Q motif prot... [more]
A0A4D9B4153.320e-1027.19ATP-dependent RNA helicase DDX18/HAS1 n=6 Tax=Salv... [more]
A0A2P4Y4S23.670e-1030.81DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora pa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 121..230
e-value: 3.8E-8
score: 34.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 15..120
e-value: 5.8E-14
score: 53.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..221
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 22..103
e-value: 3.9E-9
score: 36.5
NoneNo IPR availablePANTHERPTHR47958ATP-DEPENDENT RNA HELICASE DBP3coord: 18..220
NoneNo IPR availablePANTHERPTHR47958:SF59ATP-DEPENDENT RNA HELICASE DDX17-RELATEDcoord: 18..220
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 59..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:893139..894250 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5545.t1Ggra5545.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 893139..894250 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5545.t1 ID=Ggra5545.t1|Name=Ggra5545.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MAFELLLEQIRIPPWPSPSGRSRKRLRNSPVDLVIGTPGSIEVMRNEQLL
YVSRVSTIVLDEADELVSTNAGFGPQLTGLMSVLREKDAQFVDSGATVPH
TMEKELRRWHGGNLEVALGSRLHRATSSLRVKTTFIRVDGSEDAKLQKLI
EVFSVAQKRTKAGKILIFCDNVKRGQAIVRELRSKGTDVVHLSGEGRDKD
DRSADWEAFSSGQVCVAMAYQGYRKGIQYVLAGRREQAIAEELFLSHVKG
LPIAGVSPQKAWKEYTNAGRDRIATDKVMRTARSKRQARWVDERLKADGT
FRGRKRQLMIKKDDSRKGDFWLMRYNSRRKNAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS