Ggra5540.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5540.t1
Unique Name	Ggra5540.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	457

Homology

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BLAST of Ggra5540.t1 vs. uniprot
Match: A0A2V3IPR1 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR1_9FLOR)

HSP 1 Score: 181 bits (458), Expect = 1.600e-46
Identity = 85/153 (55.56%), Postives = 113/153 (73.86%), Query Frame = 0

Query:  230 VAT--LKPIPWDPFANEHDAWKVGKQGGRIPQDFLDQRMSMSEWRELRRAVLEKGDDVDKLAFKLLAEMLLSPTVGVREDALDGLTCAIKKMKNVHYYSKETGSYMHFDGVPEKLYKRDRRFVEGDQEWLKARSREDEAMHLICENLYFKFAQ 380
            VAT  +KP+ WDP+ +  +   VGK+G R+P  FLD   SMSEWRE+R  V EKGDDVDKLAFKL+ E+LLSPT+G++  ALD L  AIKK    HYYSK TG Y +   + +K++KR+RRF+EGD++W+K +S ED+AMHL CEN+++ F Q
Sbjct:  524 VATNRVKPVAWDPYLSMFNPALVGKEGKRVPDAFLDAVPSMSEWREMRHCVFEKGDDVDKLAFKLMQEILLSPTLGIQASALDHLDRAIKKHGAAHYYSKATGGYSYRKDLADKMWKRERRFIEGDEKWMKEQSDEDKAMHLFCENVHYAFEQ 676

[Close]

BLAST of Ggra5540.t1 vs. uniprot
Match: R7QP37 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP37_CHOCR)

HSP 1 Score: 76.6 bits (187), Expect = 3.020e-11
Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 0

Query:  257 IPQDFLDQRMSMSEWRELRRAVLEKGDDVDKLAFKLLAEMLLSPTVGVREDALDGLTCAIKKMKNVHYYSKETGSYMHFDGVPEKLYKRDRRF---VEGDQEWLKARSREDEAMHLICENLYFKFAQREVPEARQEAHVSSLPVLGRMISHSGEDS--LKIDGMAGGRGSGIDAVESDELFLQI 435
            + + +L+  M ++EWRELR +VL    DVDKLA+K++ E++LSP +G+ E  L  L+ A+    N HY +   G +      P  L + D ++   ++ D +W + ++ E  A+    +NL + F              S  P  G   + +      + +DGM+  R    DAV +D L+ ++
Sbjct:  414 VSRGYLNTPMPVTEWRELRHSVLSGTSDVDKLAYKMMQELVLSPVLGINETLLAPLSKAMMSAVNKHYVTPH-GIFAKLSDFPTGLLRMDPKYNSELKADADWSQYQTPEYLALCQFRDNLEYTFDNHRHQTKPTSNLRSDAPPRGSFGARNQRKGPGVPLDGMSSPRYQ--DAVATDPLYTKL 594

The following BLAST results are available for this feature:

BLAST of Ggra5540.t1 vs. uniprot

BLAST of Ggra5540.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IPR1	1.600e-46	55.56	C2H2-type domain-containing protein n=1 Tax=Gracil...	[more]
R7QP37	3.020e-11	28.26	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:867325..868695 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5540.t1	Ggra5540.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000842_pilon 867325..868695 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5540.t1 ID=Ggra5540.t1|Name=Ggra5540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MKQHLGGKKHRTNRDELSQKQPNSSNSSHHHPQSQRDDRRATQNSAAAHA
RNPKFRPSASMRVAPEGNERTPNNPRTEGNAARDAQVRPSANARASDRDE
PSWNARPPVPVRTAGSSNQTSLDLRSYIASFRSSQHARHRSDAARSNMEV
ERHSTPHPAASPTSQSGSSHGGEGRPWSLYNGESTRYGGRNDTPAQRFRP
TSTAQPSGNEDGCSTTHGSGKNKPQPKDRVATLKPIPWDPFANEHDAWKV
GKQGGRIPQDFLDQRMSMSEWRELRRAVLEKGDDVDKLAFKLLAEMLLSP
TVGVREDALDGLTCAIKKMKNVHYYSKETGSYMHFDGVPEKLYKRDRRFV
EGDQEWLKARSREDEAMHLICENLYFKFAQREVPEARQEAHVSSLPVLGR
MISHSGEDSLKIDGMAGGRGSGIDAVESDELFLQIREFLNPQERVRRAVH
VAARHE*