Ggra5523.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5523.t1
Unique NameGgra5523.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Homology
BLAST of Ggra5523.t1 vs. uniprot
Match: A0A2V3IQ92 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ92_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.420e-92
Identity = 179/486 (36.83%), Postives = 265/486 (54.53%), Query Frame = 0
Query:   31 FRCEGKNESSTKHGTGTCLARLQVYPEQYEMCKD-NSNVTCYLFLKQAPYIVLNEPSYFNESSSALHLQSPFRCGSYQQQFQQQGGIRGISLELNKISSSSDDYCMWVGHTSNCTFNQLVRFIEVMAEKGYRFAINNGLIDLPSRRCLAEAGAPLIFDKIAIFGAVTSNPSNTQQVL-QLLHPFHMGTWLMLALGFVVLIALRLAIGAKYHWFLPSLRKIRPSLTTAIGSGGD-------STWVNGLSDSER----EELRVAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASINI-VKGPSQTEHAQFAVPSKSALEVVWENEVT----QNWNQDLPLGKRPWTECSTTEEGFQWVTSGKVKYVVSFAIRGRYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMNGRMKLLFDKYFTDSQCAKHAESHIRPLTIFIPMMIFVFPRLVGVVIVLCTNLRKRGDE 498
            F C   N  ++++    CL  L +    YE C+  +SNVTCY+FL++ P+I L+    +N S +A  LQ PF CG ++ QF   GGI GI+ E +K++SS +D CMW GH+ +C FNQLV +  +MA++GYRFA+   L++LPSR+C     A L    + I G   ++    Q    QL+ PF  G W +     ++ I +   I  ++HWF     + R  +T      G+          VN  ++ +      +  +AMTL+R +++A+ AI ALFYE+AVVNFLFQQ+N S++  VK     +   F+V   SALE VW   V      NW  DLP     W  C T  E   W   GK  Y+V+F I G++LL+ + EC  +++F+T   LY FN  W YNK  S  ++ QVDR+++ LR++G+ + L D Y  +  C ++    I P  I IP +IFV P L   V+VL    ++R  E
Sbjct:   32 FDCTQHNPRASQNNGKGCLRNLNINRHLYEQCRSKDSNVTCYIFLQEPPFINLDRVQLWNSSDAATQLQKPFECGDFEDQFLHVGGIGGIAFETHKLTSSRNDLCMWGGHSDDCGFNQLVDYTHLMADEGYRFAVTGLLLELPSRQCFHHPSAALTDSAVIIVGQKDASNGVVQGPFEQLIRPFDWGAWGIFGGVLILFIIVCFTIAVRFHWF-----RGRSLITAFFIFAGERDEAMAHEANVNHHNNDDAMAFATKYGLAMTLFRMALLALIAIFALFYEVAVVNFLFQQQNQSLSKPVKRLPLADLKHFSVLRGSALENVWNATVLAGRKDNWGNDLP-----WQRCPTATECVDWTKEGKTTYMVTFEIVGKHLLAQKTECSELTVFKTKDVLYHFNGGWLYNKAVSEERRMQVDRELVGLRIDGQSRKLVDSYLDEYTCEENIVLTIGPTIILIPCLIFVLPPLACSVLVLVLWKKRRRRE 507          
BLAST of Ggra5523.t1 vs. uniprot
Match: A0A2V3IE21 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE21_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 7.810e-55
Identity = 144/479 (30.06%), Postives = 227/479 (47.39%), Query Frame = 0
Query:   55 YPEQYEMCKDNSNVTCYLFLKQAPYIVLNEPSYFNESSSALHLQSPFRCGSYQQQFQQQGGIRGISLELNKISSSSDDYCMWVGHTSNCTFNQLVRFIEVMAEKGYRFAINNGLIDLPSRRCLAEAGAPLIFDKIAIFGAVT-SNPSNTQQVLQLLHPFHMGTW----------LMLALGFVVLIALRLAIGAKYHWFL-----------------PSLRKIRPSLTTAIGSGGDSTW----------VNG-LSDSEREELR-----VAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASINI-VKGPSQTEHAQFAVPSKSALEVVWENEVTQNW-----NQDLPLGKRPWTECSTTEEGFQWVTSGK--VKYVVSFAIRGRYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMNGRMKLLFDKYFTDSQCAKHAESHIRPLTIFIPMMIFVFPRL 481
            Y   YE+CK   N TC++F K  P +V  +   F +  +   +Q PF+CG  +      GGI     EL+K +SS DD+C W GH S CT+N LV F+ VMA +GYRF ++  +++ P R+C  +A  P +  ++ I G  +  +  +T  + QL  PF   +W          L+L +G V  I  R  +      F+                 P   +   S+ +  GS  D T            NG L +  R  +      +A+ L R S +   A+  +FYE+++VNF+FQQ+N  I   V   S  E  +F++   SALE +W   V  +        D  +   PW  C    +   W  +GK  VK+ VS+ ++ +  L     C+ +  FET R L+TFN+ W YN       + + DR+I++LR++G +  +++ Y  D  C +     ++ L I IP++IFV P L
Sbjct:   62 YAAAYEVCK---NSTCFIF-KGEPPLVKYDLETFYKPENRKKMQRPFKCGDPKSLHPSLGGI---VFELHKKTSSRDDFCTWAGHPSECTWNALVDFVHVMAGRGYRFVVSGPMLETPQRKCYHQASGPWLDSRMVIIGRNSPEDVVSTNPLKQLTQPFETLSWVTLVLFLFVYLLLGIGIVNRIRRRRNVSLVTALFIFTGDLEHAIKHETCPQPPRAERENDSIESGDGSTSDGTSRTASTVHVSVSNGHLGEQRRRRISFLRYSLAINLIRVSFLFFVALFVMFYELSLVNFVFQQQNLHIKKDVDSLSPNELNKFSIMKNSALENIWNRTVNPHGLKYDGTNDTQI---PWKRCRNALQCIDWTLNGKYGVKFTVSYELQAQNALQTIASCEELVFFETRRNLHTFNSGWLYNSAVPENIRKRYDREIVALRIDGTLTRIYNSY-VDFTCEERRTLKVKSLIIVIPILIFVLPPL 529          
BLAST of Ggra5523.t1 vs. uniprot
Match: A0A2V3J388 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J388_9FLOR)

HSP 1 Score: 186 bits (473), Expect = 1.340e-48
Identity = 135/499 (27.05%), Postives = 233/499 (46.69%), Query Frame = 0
Query:   48 CLARLQ--VYPEQYEMCKDNSNVTCYLFLKQAPYIVLNEPSYFNESSSALHLQSPFRCGSYQQQFQQQGGIRGISLELNKISSSSDDYCMWVGHTSNCTFNQLVRFIEVMAEKGYRFAINNGLIDLPSRRCLAEAGAPLIFDKIAIFGAVTSNPSNTQ---QVLQLLHPFHMGTWLMLALGFVVLIALRLAIGAKYH-------------------------------------------WFL------PSLRKIRPSLTTAIGSGGDSTWVNGLSDSE--REELRVAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASIN-IVKGPSQTEHAQFAVPSKSALEVVWENEVTQ-----NWNQDLPLGKRPWTECSTTEEGFQWVTSGK--VKYVVSFAIRGRYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMNGRMKLLFDKYFTDSQCAKHAESHIRPLTIFIPMMIFVFPRLV 482
            CL+ L    +   + +CK N    C++F  + P ++ ++   F E +     Q PF+CG   Q       + G ++EL+K +S+ ++YC+W G+ S CT+N LV F   MA +GY+FAI   +++   R+C   +  P + + + I G   + P   +   Q+ QL+ PF  GTW+ + +  ++++ L   +   +H                                           W        P+  +IR S  ++  S  +   ++ ++++E  R +  VA +L+R +++    +  LFYE AVV FLF QR   I   V   S  E   FAV   SALE +W   V       +W   + L   PW  CS TE+  + V  G   V++ V++ + G +L+    +CD ++ F+T   L+ FN  W  N      K+ Q DR++++LR+NG +  L ++Y  D  C +     I P+ + IP+++ V P L+
Sbjct:  122 CLSALSDPEFAHYFNVCKTN---VCFIFKWEGPMVMFDKSIVFEEENKT-RFQIPFKCG---QPSDWHPSLAGYAIELHKRTSTRNEYCVWAGNPSECTWNGLVDFTGAMARRGYQFAITGPMLETAQRKCEHYSSGPWLDNPMIIIGR--NEPPAIRLGDQISQLVKPFSPGTWITICVVLLLIVILSFILVNVFHVSGSNSLFTAYMLLIGDREQALLFGRSHGKRKKGRRKSCFNMFWLSRRSTKNPNASEIRQSNASS-RSESEVCSIDLVAETEQYRSQYNVATSLFRFALICFAGLFFLFYEAAVVQFLFHQRRIEITKSVTTLSDEELRSFAVMGDSALEDIWLATVDPGGSRVDWKNKMNL---PWKRCSKTEDCIRMVKDGTDGVRFTVTYEVEGSFLIHELSDCDHLTRFDTTESLHYFNGGWLMNSLVDHEKRRQFDRELVALRINGSVSQLLNQY-ADHYCKRDNIVSIGPIILVIPIIVLVLPPLI 606          
BLAST of Ggra5523.t1 vs. uniprot
Match: A0A2V3J4B8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B8_9FLOR)

HSP 1 Score: 126 bits (317), Expect = 1.490e-27
Identity = 75/226 (33.19%), Postives = 122/226 (53.98%), Query Frame = 0
Query:  268 LSDSEREELRVAMTLYRSSVVAMFAILALFYEIAVVNFLFQQRNASINIVKGPSQT-EHAQFAVPSKSALEVVWENEVTQNWNQDLPLGKR---------PWTECSTTEEGFQWVTS--GKVKYVVSFAIRGRYLLSGRGECDAISMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMNGRMKLLFDKYFTDSQCAKHAESHIRPLTIFIPMMIFVFPRL 481
            + DS   +  +A +L+R S++A  A+ +LFYE+AVVNFLFQQ+   I    G   T E  Q+ V   + LE +W N V        P G++         PW  C   +E   WV      V++ VS+ + GRYL+  R  C+A++++ET   L+ FN+ W +N+R    ++ ++DR++++LR+NGR+  L +      +C     S I  L + +P+M+ V P L
Sbjct:  334 IDDSFLTKFSLATSLFRISLIAFIAMFSLFYEVAVVNFLFQQQRIEIPKSIGQLSTLELRQYCVLKDTGLENIWNNTVN-------PTGRKFDGSDEKEIPWKRCVHAQECLDWVLDDDNPVQFFVSYEMEGRYLMHSRTNCEAVAIYETRETLHQFNSGWLFNERVPEKRRRELDRELMALRLNGRLTQLHNG--VGPRCQPDVISSIDYLILLLPVMVLVVPPL 550          
BLAST of Ggra5523.t1 vs. uniprot
Match: A0A2V3ITB5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITB5_9FLOR)

HSP 1 Score: 94.0 bits (232), Expect = 3.540e-19
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 0
Query:   37 NESSTKHGTGTCLARLQVYPEQYEMCKDN-SNVTCYLFLKQAPYIVLNEPSYFNESSSALHLQSPFRCGSYQQQFQQQGGIRGISLELNKISSSSDDYCMWVGHTSNCTFNQLVRFIEVMAEKGYRF 162
            +E S   G    L  L++ P+ Y+ C+ + SN+TC  FL+Q P I        N S  A  LQ   +CG    QF + G  R ++ E++++++S DD+CMW GH+   TFNQLV + ++MAEK   F
Sbjct:    7 HELSPYEGIEQGLRNLELNPDLYDSCRPHDSNITCNNFLQQPPLIAFKRMYMRNNSDEAFVLQKLLKCGPLSDQFLEFGSGRELASEIDELTASDDDWCMWYGHSDCWTFNQLVDYTQIMAEKNIAF 133          
The following BLAST results are available for this feature:
BLAST of Ggra5523.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IQ921.420e-9236.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IE217.810e-5530.06Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J3881.340e-4827.05Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4B81.490e-2733.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITB53.540e-1937.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 469..492
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 287..307
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 308..468
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 493..505
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..286
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 355..453
NoneNo IPR availableTMHMMTMhelixcoord: 285..307
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 467..489

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:807830..809644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5523.t1Ggra5523.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 807830..809644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5523.t1 ID=Ggra5523.t1|Name=Ggra5523.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MCLKSMRPISQLLILLLIGVNTADSVSVHTFRCEGKNESSTKHGTGTCLA
RLQVYPEQYEMCKDNSNVTCYLFLKQAPYIVLNEPSYFNESSSALHLQSP
FRCGSYQQQFQQQGGIRGISLELNKISSSSDDYCMWVGHTSNCTFNQLVR
FIEVMAEKGYRFAINNGLIDLPSRRCLAEAGAPLIFDKIAIFGAVTSNPS
NTQQVLQLLHPFHMGTWLMLALGFVVLIALRLAIGAKYHWFLPSLRKIRP
SLTTAIGSGGDSTWVNGLSDSEREELRVAMTLYRSSVVAMFAILALFYEI
AVVNFLFQQRNASINIVKGPSQTEHAQFAVPSKSALEVVWENEVTQNWNQ
DLPLGKRPWTECSTTEEGFQWVTSGKVKYVVSFAIRGRYLLSGRGECDAI
SMFETNRELYTFNAVWYYNKRCSTAKKGQVDRDILSLRMNGRMKLLFDKY
FTDSQCAKHAESHIRPLTIFIPMMIFVFPRLVGVVIVLCTNLRKRGDEVE
RVEVQ*
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