Ggra5434.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5434.t1
Unique NameGgra5434.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Homology
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A2V3IEW0 (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEW0_9FLOR)

HSP 1 Score: 226 bits (577), Expect = 9.600e-73
Identity = 101/129 (78.29%), Postives = 116/129 (89.92%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVDERFRSFNLSTTASMALWDAYKDVTMRRNI 129
            +GFSLDE+Q+RRAGLDYWQHVD+RVYEDW QFANGKMK+LGGTRLFFTKFGD+CA+EI+W   GK V++FGSEV GFDGIRDWL  EGK+E RVAFPMVD+RFRSFNLSTTASMALWDAY+ V  R ++
Sbjct:  108 LGFSLDEKQVRRAGLDYWQHVDVRVYEDWAQFANGKMKQLGGTRLFFTKFGDRCASEIEWNERGKTVLVFGSEVHGFDGIRDWLHSEGKHEIRVAFPMVDDRFRSFNLSTTASMALWDAYRHVARRGHV 236          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A5J4YR67 (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR67_PORPP)

HSP 1 Score: 133 bits (335), Expect = 7.000e-36
Identity = 68/128 (53.12%), Postives = 86/128 (67.19%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVD-ERFRSFNLSTTASMALWDAYKDVTMRR 127
            +GFSL+++Q+RRAGLDYWQHVDLR YE W  F    +  LG  RL+FTK+      ++ +    K V+IFGSEV G   IR WLD        VA+PM   E+FRSFNLST+ASMALW+AYK +T+ R
Sbjct:  134 IGFSLEDKQVRRAGLDYWQHVDLRFYESWDAFLP-TLATLG-RRLYFTKYAHSSMLDVTFDDSTKTVLIFGSEVTGLTSIRGWLDANEDPANFVAYPMHSPEQFRSFNLSTSASMALWEAYKTITLVR 259          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A7S0ZGK6 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGK6_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 6.270e-35
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPM-VDERFRSFNLSTTASMALWDAYKD-VTMRRN 128
            +GFSLD++ ++RAGLDYW+ VDLRVYE+W QF    + +    R +FTK+      ++ +   GK V+IFGSEVDG   IR+WL+     +  VA+PM   + FRS+NLST+ASMALW+AYK  V +RR+
Sbjct:  128 IGFSLDDKHVKRAGLDYWKFVDLRVYENWAQFV--PVLKTFTNRFYFTKYAHVSMLDVSFTDSGKTVLIFGSEVDGLTSIREWLNENEDPQHMVAYPMNAPDVFRSYNLSTSASMALWEAYKSIVNIRRS 255          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A1X6NP17 (SpoU_methylase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NP17_PORUM)

HSP 1 Score: 117 bits (293), Expect = 1.070e-30
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVD-ERFRSFNLSTTASMALWDAYKDVTMRRNIGTG 132
            + FSL    +RRAGLDYW  VD+ ++E W  F +  +  LG    F+TK       ++++     +V++FGSEVDGFD I    +G   +   VAFPMV+ +RFR+FNLST+ASMA+WDAY+ +T+RR +  G
Sbjct:   35 ISFSLSAAAVRRAGLDYWWGVDVTIHESWATFRDEVLPGLGDA-YFYTKHAPVTQVDVEYDDARGVVLLFGSEVDGFDSIAGEWEGV-PDATPVAFPMVEGDRFRAFNLSTSASMAVWDAYRQITLRRRLRHG 165          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A7S0BL64 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL64_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 9.010e-25
Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFA-NGKMKELGGTRL---FFTKFGDQCATEIQWPPEGK--IVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVDERF-RSFNLSTTASMAL 116
            + FSLDE+Q+RRAGLDYWQ VDL ++E W  F   G  +E  G++    FFTK+G +   ++++P +GK  IV++FG+E DG   I D L+    N  +VA PM ++   RS+NLST+AS+AL
Sbjct:   95 IAFSLDEKQVRRAGLDYWQSVDLHLWESWADFEMKGPYRE--GSKAESYFFTKYGAESLLDVRFPTDGKTKIVLVFGNETDGLTEIEDQLE----NRNKVALPMHNQDLMRSYNLSTSASIAL 211          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A7W1I0N5 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1I0N5_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.530e-22
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPE----GKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVDERFRSFNLSTTASMALWDAYK 121
            +GFSLDERQ+RRAGLDYW+HVDLRV++DW  F   ++  LG    F TK     AT   W       G IV+IFG E  G  G       E  ++R V  PM+  R RS NLSTT  +A+++  +
Sbjct:   35 LGFSLDERQVRRAGLDYWEHVDLRVWKDWDTFER-ELSTLGTPYFFSTK-----ATRPLWDAPLGSPGDIVLIFGRETGGLPGDVH----ERYHDRFVGMPMLSPRVRSLNLSTTVGIAVYEVLR 149          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A7J7IL86 (SpoU_methylase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IL86_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 7.890e-21
Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWPPEG--------KIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMV---DERFRSFNLSTTASMALWDAYKDV 123
            +GFSL +R ++RAGLDYW HVDLRV+  W  F    +  LG    FFTKF  +    +              KI +IFG+E+ GF+ I      +   ER VA PMV   +   RS+NLST+  + LW+AY+ V
Sbjct:   92 LGFSLSDRHLKRAGLDYWPHVDLRVWPSWSVFWEKGIPTLGHV-FFFTKFAARSLVNVDLVDSSANADLLNTKITLIFGNEIHGFENIPP---EDIPLERTVAIPMVCPSESGIRSYNLSTSVGIVLWEAYRQV 221          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A7W0QP26 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W0QP26_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 2.190e-20
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWP-----PEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVDERFRSFNLSTTASMALWDAYK 121
            +GFSLDERQ++RAGLDYW+HVD+RV+ DW  F N ++  LG    F TK     AT+  W      PE  +V++FG E  G          E   ER V  P++  R RS NLST+ ++A+++  +
Sbjct:   36 LGFSLDERQVKRAGLDYWEHVDVRVWADWRAFEN-ELPTLGDPYFFSTK-----ATQSFWDAPLGGPE-NVVLVFGRETGGLPADLH----ERYRERFVTMPILSPRVRSLNLSTSVAIAVYETLR 150          
BLAST of Ggra5434.t1 vs. uniprot
Match: tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL n=1 Tax=Jannaschia sp. Os4 TaxID=2807617 RepID=UPI001EEDF283 (tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL n=1 Tax=Jannaschia sp. Os4 TaxID=2807617 RepID=UPI001EEDF283)

HSP 1 Score: 90.1 bits (222), Expect = 2.820e-20
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTR---LF-FTKFGDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVDERFRSFNLSTTASMALWDAYK 121
            +GFSLDE+ +RRAGLDYW HV L  Y DW  FA+ +     G R   LF F +FG +   E+ WPP+    ++FGSE  G  G    LDG  + +R V  PM     RS NLS   + A + A++
Sbjct:   26 LGFSLDEKAVRRAGLDYWPHVPLHEYADWDDFASRR-----GAREAALFPFEEFGPRTCYEVDWPPDAH--LLFGSETVGLPGAV--LDG--RRDRAVRLPMRSPHVRSLNLSNAVAAAAYVAFR 139          
BLAST of Ggra5434.t1 vs. uniprot
Match: A0A521TEG9 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521TEG9_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 4.190e-19
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    1 MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKFGDQCATEIQWP-PEGK---IVMIFGSEVDGFDG-IRDWLDGEGKNERRVAFPMVDERFRSFNLSTTASMALWDAYK 121
            +GFSLD+RQ++RAGLDYW+HVDLRV+ DW  F    +  LG    F TK     AT   W  P G+    V+IFG E  G    +R     E  N+R V  P++ E  RS NLST+ ++A+++  +
Sbjct:   34 LGFSLDDRQVKRAGLDYWEHVDLRVWPDWGAFERA-LPALGEPWFFSTK-----ATRELWDAPLGESEDAVLIFGRETGGLPSEVR-----EKYNDRLVKIPILSEHVRSLNLSTSVALAVYEVMR 148          
The following BLAST results are available for this feature:
BLAST of Ggra5434.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEW09.600e-7378.29Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
A0A5J4YR677.000e-3653.13Putative tRNA (Cytidine(34)-2'-O)-methyltransferas... [more]
A0A7S0ZGK66.270e-3549.23Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NP171.070e-3044.36SpoU_methylase domain-containing protein n=1 Tax=P... [more]
A0A7S0BL649.010e-2546.34Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7W1I0N51.530e-2244.80Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
A0A7J7IL867.890e-2140.30SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A7W0QP262.190e-2041.27Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]
tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL n=1 Tax=Jannaschia sp. Os4 TaxID=2807617 RepID=UPI001EEDF2832.820e-2042.40tRNA (uridine(34)/cytosine(34)/5- carboxymethylami... [more]
A0A521TEG94.190e-1942.06Putative tRNA (cytidine(34)-2'-O)-methyltransferas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001537tRNA/rRNA methyltransferase, SpoU typePFAMPF00588SpoU_methylasecoord: 3..116
e-value: 2.6E-9
score: 37.4
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 1..131
e-value: 1.0E-16
score: 62.8
IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferasePANTHERPTHR42971TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASEcoord: 2..124
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 2..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:114871..115404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5434.t1Ggra5434.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 114871..115404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5434.t1 ID=Ggra5434.t1|Name=Ggra5434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKF
GDQCATEIQWPPEGKIVMIFGSEVDGFDGIRDWLDGEGKNERRVAFPMVD
ERFRSFNLSTTASMALWDAYKDVTMRRNIGTGHDTVRVDDSVVLKVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001537SpoU_MeTrfase
IPR029026tRNA_m1G_MTases_N
IPR016914tRNA_cyt/urid_MeTfrase
IPR029028Alpha/beta_knot_MTases