Ggra5427.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5427.t1
Unique NameGgra5427.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Homology
BLAST of Ggra5427.t1 vs. uniprot
Match: R7QP02 (Uma2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP02_CHOCR)

HSP 1 Score: 85.1 bits (209), Expect = 1.220e-15
Identity = 67/215 (31.16%), Postives = 105/215 (48.84%), Query Frame = 0
Query:   22 SQSALSQQGDTYTSLNLVSASFEQYISILNREYGVYDFVDGVLI-AHEMSTRSHDQVIVYLITMFNELHRETQHSIKA-LKEPTVGIPAKRRSNRVQSRSSQRHPRITFEHQRRERRPDIAVGTPQNDAQAAQRSHRSNRVQYPVNHPPKIVVEITS-NNRSTDLDEKKEDYARAKVKTYMIIDRDVPHMNQDTHRPQVLLGTLRA-GKYRWKSY 232
            S S  S+ GD    L+L+  + +QY  + N     Y+ V+G+L    EM+T SHD++   +       H      +   +   T G+     S+   S  S R  R          RPD+ V    +  +    S +S ++ +P NHPP + +E+TS + RS DL  K+E+YA+A V+ Y+IIDR        T  P V++GTL + GKY  ++Y
Sbjct:   37 SLSPTSRPGD----LHLLPCTVDQYFDLPNAADNKYELVEGILWWKSEMATHSHDEIRNRVAAEIGRFHIAENLVVSTEMGLETSGLTTPSGSSHNASEKSLRSIR----------RPDVIVSQRDHGLRRCDLSPQSKKISFPRNHPPLLALEVTSPSTRSADLTSKREEYAKAGVRQYVIIDRA-------TATPAVIVGTLNSNGKYVQETY 230          
BLAST of Ggra5427.t1 vs. uniprot
Match: R7Q978 (Uma2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q978_CHOCR)

HSP 1 Score: 61.2 bits (147), Expect = 3.220e-7
Identity = 57/212 (26.89%), Postives = 100/212 (47.17%), Query Frame = 0
Query:   36 LNLVSASFEQYISILNREYGVYDFVDGVLI-AHEMSTRSHDQVIVYLITMFNELHRETQHSIKALKEPTVGIPAKRRSN---RVQSRSSQRHPRITFEHQRRERRPDIAVGTPQNDAQAAQRSHRSNRVQYPVNHPPKIVVEITSNNRSTDLDEKKEDYARAKVKTYMIIDRDVPHMNQDTHRPQVLLGTL-RAGKYRWKSYGP----GCSF 238
            L+L   +FE+Y+++       Y+ VDG+L+    M+   H Q+I +L  +   L  + +  I+   +  V I +KR +    +V S S                    A+ +P  +  + ++   ++R+  P +  P +++E+TSNNR TDL  K+ +Y +  VK ++++DR     N     P V + TL R  KY  K+Y       CSF
Sbjct:   93 LHLTPCTFEEYLTLGCDSDHRYELVDGLLVWCPPMADEEHGQLITFLDRILEYLPADYKPQIQHNTQRGVRIISKRSTKCEYQVDSSS--------------------ALPSPDTEDSSGEQEEATSRL--PSSPHPVMLIEVTSNNRRTDLGIKRNEYEQEGVKEFVVVDRQ---KNVKNWSPCVTVFTLNRRKKYIAKTYKGKEKVNCSF 279          
The following BLAST results are available for this feature:
BLAST of Ggra5427.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QP021.220e-1531.16Uma2 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q9783.220e-726.89Uma2 domain-containing protein n=1 Tax=Chondrus cr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012296Nuclease, putative, TT1808GENE3D3.90.1570.10tt1808, chain Acoord: 39..226
e-value: 1.9E-18
score: 68.3
IPR008538Putative restriction endonucleasePFAMPF05685Uma2coord: 43..232
e-value: 4.0E-17
score: 62.3
IPR008538Putative restriction endonucleaseCDDcd06260DUF820coord: 57..204
e-value: 3.30376E-12
score: 60.5209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..160
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 37..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:57915..58658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5427.t1Ggra5427.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 57915..58658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5427.t1 ID=Ggra5427.t1|Name=Ggra5427.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MTPTESITHQSDEEPCSEGATSQSALSQQGDTYTSLNLVSASFEQYISIL
NREYGVYDFVDGVLIAHEMSTRSHDQVIVYLITMFNELHRETQHSIKALK
EPTVGIPAKRRSNRVQSRSSQRHPRITFEHQRRERRPDIAVGTPQNDAQA
AQRSHRSNRVQYPVNHPPKIVVEITSNNRSTDLDEKKEDYARAKVKTYMI
IDRDVPHMNQDTHRPQVLLGTLRAGKYRWKSYGPGCSFRALFWYVGS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012296Nuclease_put_TT1808
IPR008538Uma2
IPR011335Restrct_endonuc-II-like