Ggra5417.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5417.t1
Unique NameGgra5417.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Homology
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BLAST of Ggra5417.t1 vs. uniprot
Match: A0A2V3ILD7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILD7_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 2.160e-31
Identity = 148/193 (76.68%), Postives = 159/193 (82.38%), Query Frame = 0 
Query:    3 ASKLRIEFLLNGNETSVGE---GSSXXXXXXXXXXXXXXXXHGATSSKRPFPCETCGFSFSQRSDRAKHIRTVHLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPGCDKAFKQKAHADXXXXXXXXXXXXCECFCGARFREKYNMRQHQKAVHNM 192
            +SKLRI+FLLNG +    E    +     XXXXXXXXXXXX     +KRPF C+TCGF+F+QRSDRAKHIRTVHLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPGCDK FKQKAHAD            CECFCGARFRE+YNM+QHQKAVHN+
Sbjct:   18 SSKLRIDFLLNGGKAGDVEHCAATHASSSXXXXXXXXXXXXXXXAPTKRPFACDTCGFAFTQRSDRAKHIRTVHLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPGCDKTFKQKAHADKHVTSVHRKEKPCECFCGARFRERYNMKQHQKAVHNL 210
The following BLAST results are available for this feature:
BLAST of Ggra5417.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILD72.160e-3176.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 137..162
e-value: 0.034
score: 23.3
coord: 79..102
e-value: 0.0057
score: 25.9
coord: 108..131
e-value: 0.087
score: 21.9
coord: 50..73
e-value: 0.0037
score: 26.5
coord: 166..190
e-value: 31.0
score: 9.0
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 50..73
e-value: 2.4E-5
score: 24.5
coord: 79..102
e-value: 8.5E-4
score: 19.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 110..131
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 168..190
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 52..73
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 139..162
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 81..102
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 137..167
score: 12.590717
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 166..195
score: 10.574757
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 108..136
score: 12.486803
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 79..107
score: 13.27656
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 50..78
score: 13.338909
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 77..101
e-value: 7.6E-9
score: 37.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 102..139
e-value: 3.6E-8
score: 35.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 48..74
e-value: 3.3E-8
score: 35.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 140..190
e-value: 6.2E-10
score: 41.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..42
NoneNo IPR availablePANTHERPTHR24393ZINC FINGER PROTEINcoord: 34..157
coord: 102..190
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 88..148
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 135..187
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 48..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:413736..414406 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5417.t1Ggra5417.t1Gracilaria gracilis GNS1m malemRNAtig00000099_pilon 413736..414406 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5417.t1 ID=Ggra5417.t1|Name=Ggra5417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MSASKLRIEFLLNGNETSVGEGSSSSSGSFMSSSSSSSSSHGATSSKRPF
PCETCGFSFSQRSDRAKHIRTVHLRQRPFSCQYCAQSFGEKGNLNKHIRA
LHEKARPFKCEECKSAFSFHDGLQRHVAMVHRDRRPFACSEPGCDKAFKQ
KAHADKHVTSVHRKEKPCECFCGARFREKYNMRQHQKAVHNMHRSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf