Ggra5405.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5405.t1
Unique Name	Ggra5405.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	619

Homology

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BLAST of Ggra5405.t1 vs. uniprot
Match: A0A2V3IF70 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF70_9FLOR)

HSP 1 Score: 243 bits (619), Expect = 8.870e-67
Identity = 132/424 (31.13%), Postives = 216/424 (50.94%), Query Frame = 0

Query:  194 ASLQCKSTVLPR-NPMHANLFILLARYGNFLLPPSVRKDGVSWSNERQWVLCSIDQDGSPWDLTNPRMVYGRLMQHTGL-NLPVALTTSARLNDPETKDSEIKSQWFAYNKTRMAILQNIGSHFVGSLLSVEDRSERTISMKGMRGVIHRNNSCVLDSVLFILPHLFWYIVQKELHGRAST----TLRVPCCVLLHFIMNELFPISKGSVYRERRHRAISDYIRVLVQDLASYFRKTRGPLPRYWCPFSSNEFQNIHEVLWYILPRILGAKDHTPFESELYYGRLYCTSGVMSKCNTIKGFSQLVMSLIKEKRGDSCEGIYTVNLDRSLSKDDMEVLKSLLLGPRTFRSGLFEVRLIGVIGYAFESKGTHFISGLIYETSKKNLHVYAYDGLQNGGMPKAVTASTAFKKKNPIFSLDSLFVLAV 611
            A LQ    VL   N +  N+F+LL++ G+FLLP S  K    WS+   W L SI ++G P+++ N + V+ RL+    +     A   +        +D + +  W  Y K R  +LQ  G   +G +L         + +K   G ++  NSC +D +LF+ PHLFW + + +L G  S      L  P C++  ++  E+F I+ G +YR   H+ IS Y+RVL+QDL   +   R  +PR W P + NEF N+HEVL  +LPR+LG ++     S++ +  +  TSG++S+ +T    ++++   +  K  D   G     +   L +  +   +  LLG   +        ++  IGY+  SK THFI+G ++ +   + H+Y YDGL+  G P A +   AF+ +   F +D L  +AV
Sbjct:  385 AKLQVYKIVLVSLNLLSVNIFVLLSKQGDFLLPASKCKARFQWSSTSNWCLPSIQRNGYPYEINNWKAVFERLISLEKVPEYEYASAKAVVFGINSIRDVQKEKDWDEYVKWRFLLLQTSGKKILGRMLRSRSTQHVGVPLKDRYGPLNEKNSCAIDCLLFVFPHLFWELARFDLFGCDSNGNSLALSTPGCIVFQYVFQEMFRIASGHLYRSWVHKRISSYLRVLIQDLGELYSIARNRVPRMWFPCADNEFINLHEVLAMLLPRLLGFREVITAASQVSFLVVQLTSGILSEIDTSASLAEVIHKKLCSKDLDDKIGCVVATVSFGLGETVVAEARERLLGSSHYECRGITTSVLAYIGYSTSSKKTHFIAGKLFNSKDGSEHIYIYDGLKQNGKPLASSLQNAFRFRKGKFDIDGLVAIAV 808

The following BLAST results are available for this feature:

BLAST of Ggra5405.t1 vs. uniprot

BLAST of Ggra5405.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IF70	8.870e-67	31.13	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..130
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 363..373
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 345..362
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..344
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 393..618
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 374..392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000099_pilon	contig	tig00000099_pilon:273856..275712 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5405.t1	Ggra5405.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000099_pilon 273856..275712 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5405.t1 ID=Ggra5405.t1|Name=Ggra5405.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=619bp
MEPLKMDEPKIDETITQFHRSLASDDAHDPNIRKEVIQFCSLLAFDGTEP
NAVEGNFNTIRTSDLDECFSDMDISIHSESLASDSSTPWDFELNDEVLEQ
AAPVSETTQEVGEHPSGIIHSRSNTEMESGTDETNTHKKVKFREDTLGKV
STAKGSSSLSGNHDPVDFFREFVLNHNDDLGMAPMWTEDSSHNASLQCKS
TVLPRNPMHANLFILLARYGNFLLPPSVRKDGVSWSNERQWVLCSIDQDG
SPWDLTNPRMVYGRLMQHTGLNLPVALTTSARLNDPETKDSEIKSQWFAY
NKTRMAILQNIGSHFVGSLLSVEDRSERTISMKGMRGVIHRNNSCVLDSV
LFILPHLFWYIVQKELHGRASTTLRVPCCVLLHFIMNELFPISKGSVYRE
RRHRAISDYIRVLVQDLASYFRKTRGPLPRYWCPFSSNEFQNIHEVLWYI
LPRILGAKDHTPFESELYYGRLYCTSGVMSKCNTIKGFSQLVMSLIKEKR
GDSCEGIYTVNLDRSLSKDDMEVLKSLLLGPRTFRSGLFEVRLIGVIGYA
FESKGTHFISGLIYETSKKNLHVYAYDGLQNGGMPKAVTASTAFKKKNPI
FSLDSLFVLAVCSKVMKE*