Ggra5354.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5354.t1
Unique Name	Ggra5354.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	521

Homology

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A2V3IV75 (Vesicle-associated protein 2-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV75_9FLOR)

HSP 1 Score: 201 bits (511), Expect = 1.700e-55
Identity = 231/520 (44.42%), Postives = 282/520 (54.23%), Query Frame = 0

Query:    1 MEHLVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGPSSQPQHVSDFHGYESIMELWKAVPDDKIYKKKMTVSLRMLNHSDPSLPNAQPEPTTTVPMSSQKLPIQTTTAPPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPKDATVPATLPPLPKRQAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXPPLKXXXXXXXXXXXXXXXXXXXXXXXXASSQAKSAAVEKAPVGDTTDIRGLQSAAKPIAQHPPTSVSAQEDAAQPAKQSSQDAEAKQXXXQAEQRTAAAEKVEEVDYMSTEFQRKRVLEMRTAPKITVHKLDKATRQRIANERAEQIAKVIEDRQRKVDAVKLELREARHKLSDARMATSPAYDVAYEINESSRVPFAQIAVMAIISGALLQLLV 520
            M+ LV+ SP +L F+I L KQT T V + NIS  P++YKVKTTNLKRYCVRPNAA+L+P+Q I ++IDQQAFK++P D   C DRFLLMV +++ +P  PS+     +  HG  SI ELWK++P D + KKKM V+L+ML+    S P  Q +       + Q+L   T T PP                                  QP +   P    P+ K  +P XXXXXXXXXX       XXXXXXX    P AXXXXXXX XXXXXXXXXXXXXXXX             PXXXXXX    XXXXXXXX       XXXXXXXXX                          +  P +Q  PT                                             T  +R+RV  MR APKI + KL K+ RQRIA ERA Q++ +I  RQ  +DA+KLELREARH+LSDARMAT+PAYDV YE N+++ +PFAQI +MA+IS ALLQLLV
Sbjct:    1 MDRLVTFSPHNLTFQIRLNKQTSTLVNMTNISEHPVAYKVKTTNLKRYCVRPNAAVLKPSQSITIQIDQQAFKSIPPDLNSCPDRFLLMVASLKTLP-QPSNPATDDNSVHGLASITELWKSIPSDFVLKKKMVVNLQMLD----SYPQKQID-------TPQELLQPTPTQPPAASQPEQ---------------------------QPLNIHPPTQ--PITKEPSPXXXXXXXXXXXAPIRHAPXXXXXXXLPAKPQAXXXXXXXXXXXXXXXXXXXXXXXXQPSA---------PXXXXXXXXXXXXXXXXXXTTPAQPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEAPSSQPTPT--------------------------------------------DTYSERERVTLMRIAPKIKLQKLQKSARQRIAIERAAQLSAIITQRQSDIDAMKLELREARHRLSDARMATTPAYDVKYETNDNASLPFAQIFIMAVISSALLQLLV 426

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BLAST of Ggra5354.t1 vs. uniprot
Match: D8RVU9 (MSP domain-containing protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RVU9_SELML)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-14
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVI 91
            L+++ P  LVFR  L+KQ    + +NN+S+  +++KVKTT  KRYCVRPNA ++QP    DV    QA +  P DF+ C D+F+++ +
Sbjct:    2 LITIQPSELVFRFELKKQLSCSIRLNNVSDEFVAFKVKTTAPKRYCVRPNAGVIQPRGTCDVAFTMQAQREAPADFQ-CKDKFMILSV 88

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A1S4ASK7 (vesicle-associated protein 1-1-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4ASK7_TOBAC)

HSP 1 Score: 76.3 bits (186), Expect = 1.510e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGPSSQPQHVS 108
            L+ + P+ L F   L+KQ    + + N S+  +++KVKTTN K+YCVRPN  I+ P    DV +  QA K  P D + C D+FLL     Q + +GP + P+ ++
Sbjct:    6 LLQIEPIELQFPFELKKQIACSLQLTNKSDNYVAFKVKTTNPKKYCVRPNTGIVMPHSTCDVTVTMQAQKEAPPDMQ-CKDKFLL-----QSVVVGPGTTPKDIT 104

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A2Z6MLP4 (MSP domain-containing protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MLP4_TRISU)

HSP 1 Score: 75.5 bits (184), Expect = 3.180e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQD 95
            L+SV P+ L F   L+KQ    + ++N +++ +++KVKTTN K+YCVRPN  I+ P    DV +  QA K  P D + C D+FLL  +   D
Sbjct:    7 LLSVEPIELTFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVMPRSTCDVMVTMQAQKEAPADMQ-CKDKFLLQSVKTND 97

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A022QPD3 (MSP domain-containing protein (Fragment) n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QPD3_ERYGU)

HSP 1 Score: 75.1 bits (183), Expect = 3.960e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVI 91
            L+ + PL L F   L+KQ    + + N S+ P+++KVKTTN K+YCVRPN  ++ P  + DV +  QA K  P D + C D+FLL  +
Sbjct:    6 LLQIEPLELQFPFELKKQISCSMQLTNKSDNPVAFKVKTTNPKKYCVRPNTGVVLPHSNCDVTVTMQAQKEAPPDMQ-CRDKFLLQSV 92

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BLAST of Ggra5354.t1 vs. uniprot
Match: M5X043 (MSP domain-containing protein n=7 Tax=Prunus TaxID=3754 RepID=M5X043_PRUPE)

HSP 1 Score: 75.9 bits (185), Expect = 7.300e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGPSSQPQHVS 108
            L+S+ P  L F   L KQ    + ++N +++ I++KVKTTN K+YCVRPN  ++ P    DV +  QA K  P D + C D+FLL     Q +  GP + P+ ++
Sbjct:    6 LLSIEPQELQFPFELRKQISCSLLLSNKTDSYIAFKVKTTNPKKYCVRPNTGVVSPRSTCDVIVTMQAQKEAPSDMQ-CKDKFLL-----QSVVAGPGATPKDIT 104

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A6J5U3G3 (MSP domain-containing protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5U3G3_PRUAR)

HSP 1 Score: 75.9 bits (185), Expect = 7.300e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGPSSQPQHVS 108
            L+S+ P  L F   L KQ    + ++N +++ I++KVKTTN K+YCVRPN  ++ P    DV +  QA K  P D + C D+FLL     Q +  GP + P+ ++
Sbjct:    6 LLSIEPQELQFPFELRKQISCSLLLSNKTDSYIAFKVKTTNPKKYCVRPNTGVVSPRSTCDVIVTMQAQKEAPSDMQ-CKDKFLL-----QSVVAGPGATPKDIT 104

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BLAST of Ggra5354.t1 vs. uniprot
Match: V7CGT9 (MSP domain-containing protein n=7 Tax=Phaseoleae TaxID=163735 RepID=V7CGT9_PHAVU)

HSP 1 Score: 75.9 bits (185), Expect = 7.430e-12
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQD 95
            L+S+ PL L F   L+KQ    + ++N +++ +++KVKTTN K+YCVRPN  I+ P    DV +  QA K  P D + C D+FLL  + ++D
Sbjct:    6 LLSIEPLELKFFFELKKQISCSLILSNKTDSYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVIVTMQAQKEAPSDMQ-CKDKFLLQSVKVED 96

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BLAST of Ggra5354.t1 vs. uniprot
Match: A0A061G4N1 (Plant VAP n=6 Tax=Malvaceae TaxID=3629 RepID=A0A061G4N1_THECC)

HSP 1 Score: 75.9 bits (185), Expect = 7.430e-12
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQD 95
            L+S+ PL L F   L KQ    + ++N ++  +++KVKTTN K+YCVRPN  I+ P    DV +  QA K  P D + C D+FLL  +N+ D
Sbjct:    6 LLSIEPLELKFPFELRKQISCSLLLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDVIVTMQAQKEAPPDMQ-CKDKFLLQSVNVND 96

[Close]

BLAST of Ggra5354.t1 vs. uniprot
Match: A0A1S4AX54 (vesicle-associated protein 1-2-like n=4 Tax=Solanaceae TaxID=4070 RepID=A0A1S4AX54_TOBAC)

HSP 1 Score: 75.5 bits (184), Expect = 8.780e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 0

Query:    4 LVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCVRPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGPSSQPQHVS 108
            L+ + P+ L F   L+KQ    + + N S+  +++KVKTTN K+YCVRPN  I+ P    DV +  QA K  P D + C D+FLL     Q +  GP + P+ ++
Sbjct:    6 LLQIEPIELQFPFELKKQIACSLQLTNKSDNYVAFKVKTTNPKKYCVRPNTGIVMPHSTCDVTVTMQAQKEAPPDMQ-CKDKFLL-----QSVVAGPGTTPKDIT 104

The following BLAST results are available for this feature:

BLAST of Ggra5354.t1 vs. uniprot

BLAST of Ggra5354.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IV75	1.700e-55	44.42	Vesicle-associated protein 2-2 n=1 Tax=Gracilariop...	[more]
D8RVU9	1.220e-14	43.18	MSP domain-containing protein (Fragment) n=4 Tax=S...	[more]
A0A1S4ASK7	1.510e-12	38.10	vesicle-associated protein 1-1-like n=1 Tax=Nicoti...	[more]
A0A2Z6MLP4	3.180e-12	41.30	MSP domain-containing protein n=2 Tax=Trifolium Ta...	[more]
A0A022QPD3	3.960e-12	42.05	MSP domain-containing protein (Fragment) n=3 Tax=E...	[more]
M5X043	7.300e-12	38.10	MSP domain-containing protein n=7 Tax=Prunus TaxID...	[more]
A0A6J5U3G3	7.300e-12	38.10	MSP domain-containing protein n=1 Tax=Prunus armen...	[more]
V7CGT9	7.430e-12	41.30	MSP domain-containing protein n=7 Tax=Phaseoleae T...	[more]
A0A061G4N1	7.430e-12	42.39	Plant VAP n=6 Tax=Malvaceae TaxID=3629 RepID=A0A06...	[more]
A0A1S4AX54	8.780e-12	38.10	vesicle-associated protein 1-2-like n=4 Tax=Solana...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 456..483
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..196
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 520..520
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 502..519
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..501
IPR000535	Major sperm protein (MSP) domain	PFAM	PF00635	Motile_Sperm	coord: 5..94 e-value: 7.8E-18 score: 64.3
IPR000535	Major sperm protein (MSP) domain	PROSITE	PS50202	MSP	coord: 4..138 score: 21.728323
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 1..140 e-value: 3.9E-25 score: 90.2
IPR016763	Vesicle-associated membrane-protein-associated protein	PANTHER	PTHR10809	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	coord: 3..437
IPR008962	PapD-like superfamily	SUPERFAMILY	49354	PapD-like	coord: 2..145

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:251186..252748 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5354.t1	Ggra5354.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000172_pilon 251186..252748 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5354.t1 ID=Ggra5354.t1|Name=Ggra5354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MEHLVSVSPLHLVFRITLEKQTQTFVTINNISNAPISYKVKTTNLKRYCV
RPNAAILQPAQHIDVEIDQQAFKTVPDDFEKCSDRFLLMVINMQDIPLGP
SSQPQHVSDFHGYESIMELWKAVPDDKIYKKKMTVSLRMLNHSDPSLPNA
QPEPTTTVPMSSQKLPIQTTTAPPQLPAPSEEPPVQFSPAPPAIPTPSEA
FQQQAAPTQPKDATVPATLPPLPKRQAPPPPPPKRDALPPPPPPQREAPP
VPPPKREPPAPPPPKRDLPPAPPAKHHPPPPPPPSRQPAPAPPSSSQPPP
PPPPPPLKPSPPPERHLAPTPPIPAPPAAPEPASSQAKSAAVEKAPVGDT
TDIRGLQSAAKPIAQHPPTSVSAQEDAAQPAKQSSQDAEAKQDQQQAEQR
TAAAEKVEEVDYMSTEFQRKRVLEMRTAPKITVHKLDKATRQRIANERAE
QIAKVIEDRQRKVDAVKLELREARHKLSDARMATSPAYDVAYEINESSRV
PFAQIAVMAIISGALLQLLV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000535	MSP_dom
IPR013783	Ig-like_fold
IPR016763	VAP
IPR008962	PapD-like_sf