Ggra5341.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5341.t1
Unique NameGgra5341.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Homology
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BLAST of Ggra5341.t1 vs. uniprot
Match: A0A2V3IU32 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU32_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 7.110e-27
Identity = 69/108 (63.89%), Postives = 87/108 (80.56%), Query Frame = 0 
Query:    1 MRYDTVLSMWRIVFLYSLSFPPFLFALLAFIASVLHVKRVFHIALITVLAAVVGLVTAAXXXXXXXXXXXXXXXXXXSDMSSLEAIVIGSAQGVVIGMLNAGFFHRIL 108
            M YDTVLSMWR VFL +L+FP FLF ++  +AS+LH+ ++ HI L+T+L+A +GL  +A   XXXXXXXXXXXXXXX DMSS+EA V+GSAQGV IGMLN+G  HR+L
Sbjct:    1 MAYDTVLSMWRAVFLNTLAFPVFLFIIVGLVASLLHLNKLAHIVLVTILSAFIGLAVSALLAXXXXXXXXXXXXXXXXDMSSVEAAVLGSAQGVAIGMLNSGILHRVL 108
The following BLAST results are available for this feature:
BLAST of Ggra5341.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IU327.110e-2763.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019334Transmembrane protein 170PFAMPF10190Tmemb_170coord: 6..96
e-value: 1.8E-11
score: 44.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 74..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 105..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..42
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 82..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:204970..205296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5341.t1Ggra5341.t1Gracilaria gracilis GNS1m malemRNAtig00000172_pilon 204970..205296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5341.t1 ID=Ggra5341.t1|Name=Ggra5341.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MRYDTVLSMWRIVFLYSLSFPPFLFALLAFIASVLHVKRVFHIALITVLA
AVVGLVTAALLAAIPSLLIAAIYSSVPSDMSSLEAIVIGSAQGVVIGMLN
AGFFHRIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019334Transmembrane_pr_170