Ggra5291.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5291.t1
Unique NameGgra5291.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Homology
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BLAST of Ggra5291.t1 vs. uniprot
Match: A0A2V3J4Q2 (Structural maintenance of chromosomes protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Q2_9FLOR)

HSP 1 Score: 150 bits (379), Expect = 1.450e-38
Identity = 105/177 (59.32%), Postives = 132/177 (74.58%), Query Frame = 0 
Query:   17 RNSEILSARVIVNEADQKPLDYERKTHEQIAPRAEQLTGEYEMIGKKLDSLVSERDGRHHKVCEASIKVQMFNKTCKEIRRNKIKFDMELKSHKRRXXXXXXXXXXXXXXXKDTNLRMEQARKEHFPIQEQKSRLLEELQQLELQGKELQGRIQDAANKEDGFLEEKYYKEEAVQNA 193
            RN+EILSA VIV E D+K L+YE+KTH+ IAPRAE+L+ E +  GKKL+S  S+RD  H KV  AS +VQ FNKT ++ RR  IK + ++KSH   XXXXXXXXXXXXXXX   N RMEQARK+HF  QEQKSRL++ELQ L+++ KEL   IQ +  K+   LE+KYYKE+ +QNA
Sbjct:  372 RNAEILSAWVIVQETDKKRLEYEQKTHDDIAPRAEKLSFEVDRTGKKLESFSSQRDDLHQKVDAASGRVQQFNKTYQDTRRQIIKVETDIKSHXXXXXXXXXXXXXXXXXXXXXNARMEQARKDHFAGQEQKSRLIQELQSLDMREKELNETIQSSQAKDSALLEDKYYKEQNLQNA 548
[Close]
BLAST of Ggra5291.t1 vs. uniprot
Match: R7QKQ0 (SMC_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKQ0_CHOCR)

HSP 1 Score: 64.7 bits (156), Expect = 9.500e-9
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 0 
Query:   17 RNSEILSARVIVNEADQKPLDYERKTHEQIAPRAEQLTGEYEMIGKKLDSLVSERDGRHHKVCEASIKVQMFNKTCKEIRRNK--IKFDMELKSHKRRXXXXXXXXXXXXXXXKDTNLRMEQARKEHFPIQEQKSRLLEELQQLELQGKELQGRIQDAANKEDGFLE 181
            R +E   A  ++ E + K   YE KT ++  P AE      E +  KLD L +E+   + K+ EA+ +    + +C++ +R    IKFD+E    +RR                + N RME AR++HF  QEQKSR++ E++Q+E     LQ +I D++ K++  L+
Sbjct:  370 RQAESAFAWTLLQEEEIKLHKYETKTAQEFEPEAEAARVALEKLQTKLDGLKNEQIEHNEKLQEATERSSHLSVSCRDFKRKAQTIKFDIE--RQRRRIQEFEADRDKYRRDISNANTRMESAREKHFAGQEQKSRIVHEIKQIEATISGLQEKI-DSSRKQESSLQ 533
The following BLAST results are available for this feature:
BLAST of Ggra5291.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4Q21.450e-3859.32Structural maintenance of chromosomes protein 6 n=... [more]
R7QKQ09.500e-931.74SMC_N domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..140
NoneNo IPR availableCOILSCoilCoilcoord: 148..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:238611..239195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5291.t1Ggra5291.t1Gracilaria gracilis GNS1m malemRNAtig00000082_pilon 238611..239195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5291.t1 ID=Ggra5291.t1|Name=Ggra5291.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MEICVGTVFVWRYEAQRNSEILSARVIVNEADQKPLDYERKTHEQIAPRA
EQLTGEYEMIGKKLDSLVSERDGRHHKVCEASIKVQMFNKTCKEIRRNKI
KFDMELKSHKRRLIEIDAEADEAEKRIKDTNLRMEQARKEHFPIQEQKSR
LLEELQQLELQGKELQGRIQDAANKEDGFLEEKYYKEEAVQNAN*
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