Ggra5213.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5213.t1
Unique NameGgra5213.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Homology
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A2V3J7X8 (DNA polymerase eta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7X8_9FLOR)

HSP 1 Score: 347 bits (890), Expect = 5.170e-116
Identity = 193/293 (65.87%), Postives = 226/293 (77.13%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGGSIKEYFASSASNSDSHPGSNERKEMRSEADREEEHRRLLQERADRILALKLHREESNRGIKKPGVKSSRGAKKSTGSNRTKVKSGITTVDMFFKAKNGKS 293
            M  +PLRKLRGLGGKLGKQIE LG+HTAGEATKLDM+TLE+KLG +K A FVYKCVRG+DE+EVVER++TKSLLAAKNFK ENSL TVEKQWLPLL++EL+NR+ ADSE N+RDARTLT+SFR KM  G+ R+NASRST MPQ S  KR  AI+AAAL VLK A  KE QF+FPISFIGLTATNF  RA +G SI+ YF  +   S      +  K+  S ADREEE+R+ +QE ADR LALKLHREES+RGI+K   ++S  A K  G  R K  +   TVDMFFK KN K+
Sbjct:   74 MKNVPLRKLRGLGGKLGKQIEQLGVHTAGEATKLDMDTLERKLGKRKIADFVYKCVRGLDETEVVERESTKSLLAAKNFKDENSLITVEKQWLPLLADELNNRIIADSEANSRDARTLTISFRAKMTNGYGRVNASRSTTMPQTSNLKRTGAIVAAALLVLKTAFCKESQFAFPISFIGLTATNFSERATQGESIRSYFDIADQKSGKSNDFDSPKKALSSADREEEYRKRVQESADRELALKLHREESSRGIRKTRTQNSNRALKRPGPKRRKRSAEFMTVDMFFKPKNRKT 366          
BLAST of Ggra5213.t1 vs. uniprot
Match: R7QT44 (UmuC domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT44_CHOCR)

HSP 1 Score: 241 bits (614), Expect = 2.220e-72
Identity = 154/299 (51.51%), Postives = 200/299 (66.89%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGG-HVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGGSIKEYFASSASNSDS-HPGSNERKEMRSEADREEEHRRLLQERADRILALKLHREESNRGI-----KKPGVKSSRGAKKSTGSNRTKVKSGITTVDMFFKAKNGK 292
            M ++PLRKLRGLGGKLGK++E LG+ TAGEA  L METLEK LG +K A FVY  VRG D+SEV+ERD TKSLLAAK+F  ++SL  VEK WLP+L+EEL+ R+  D E  NRDA+ L +SFR+K A      + ASRST MP A+ + R  AI+++A+ VL+ A+ +E QF+FPI+FIGLTATNF  RA    SI+ +  +S   +++ H  S   K++    D +E H+R LQE+ADR LAL+LHREES  GI     +K G KS  G   S+   R   KS  +T+D F   K  K
Sbjct:  235 MQDVPLRKLRGLGGKLGKEVEALGVATAGEAAALSMETLEKALGGRKMAAFVYNSVRGKDDSEVIERDKTKSLLAAKSFASQHSLAPVEKHWLPILAEELAERLLEDLELYNRDAKNLVISFRLKAADDVSGMITASRSTPMPAAAVEARASAILSSAVKVLRRAV-QEEQFTFPITFIGLTATNFVDRAHVNESIERHLQASGQEANNMHATSGLGKKLM--LDGKEAHKRRLQEKADRDLALRLHREESLCGIAKERRRKLGQKS--GGAGSSKKARKGEKSPASTMDKFLVRKKDK 528          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A7S3EFR3 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EFR3_9RHOD)

HSP 1 Score: 138 bits (347), Expect = 1.100e-33
Identity = 102/267 (38.20%), Postives = 144/267 (53.93%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGGSIKEYFASSASNSDSHPGSNER---KEMRSE----------------ADREEEHRRLLQERADRILALKLHREE 248
            M +LP RK+R LGGKLG ++E LG+ TAG+     +E L ++ G QK+A FV+  VRGID SEVV R   KS+LAAK+   E   + V + WL +L+ EL +RM  D E N R+AR L +SF+     G V    S++  MP+    +     +A  L  +++ +     FSFPI+F+GLTATNF  +     SI ++   SA      PG+++    KE  SE                 D E +   L QE AD +LA KL R++
Sbjct:  225 MEKLPFRKIRQLGGKLGVELEALGVETAGQVQCYKLEELSRRFG-QKNAHFVFDIVRGIDRSEVVPRSKPKSMLAAKSLPGEQDWDGVNR-WLRMLASELHDRMLFDEEVNVREARNLVISFK----SGSVPRTTSKTLPMPRGQSNR-----LARMLEEIQSLLRITPSFSFPIAFLGLTATNFEEKPADNESINKFLKPSA------PGNHQAPIVKEQASENENPGIKKWLQGPNATPDPENQADELSQETADFLLAKKLQRDD 474          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A2P6UZV9 (DNA RNA polymerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZV9_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 3.320e-21
Identity = 66/192 (34.38%), Postives = 105/192 (54.69%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGGHVR---LNASRSTAMPQASF----QKRVDAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNF 185
            M +LPL KLRG GGKLG+Q+E+LG  TAG+  +L   +L  + G ++ A ++ + VRG+    V ER+  KS+LAAK+F P   LE + K W  +L++EL+ RM ADS    R  + L V +R  +   + R    ++  S + P   F    +   +A+  AA  +  + +  E     P S + ++A +F
Sbjct:  251 MQDLPLAKLRGFGGKLGEQLEELGCTTAGQVQQLSHASLAARFGAER-ATYIEQAVRGVSHEAVQERERPKSMLAAKSFNPTYDLEAIRK-WCGILAQELAGRMAADSTQFRRRPKNLVVHYRQGVPPANPRHPPASSEHSKSCPMPRFTSHTEPSAEAVADAAFKLFTSKIAAEAM---PCSRLAISAADF 437          
BLAST of Ggra5213.t1 vs. uniprot
Match: M2WZS1 (DNA polymerase eta subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WZS1_GALSU)

HSP 1 Score: 103 bits (256), Expect = 4.550e-21
Identity = 73/199 (36.68%), Postives = 109/199 (54.77%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIED-LGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGGSIKEY 198
            +  LPL+KLRGLGGKLG +IE+     TA EA  + +E   + +G + +A+++Y  VRGID S V  R  TKS+LAAK+FK E S E +EK W+ +L+ EL  R+  D   N+R  R +         G     + S S ++P  + + RV ++   A+ +LK A      F FP + + L+ T F   +   GSI  +
Sbjct:  262 LENLPLKKLRGLGGKLGTRIEERTNAKTAKEAQNVTLEKWNEIVGRE-NAEWIYNLVRGIDYSPVNARGITKSILAAKSFKAECSWEGMEK-WIKILAYELCERLRKDETMNSR--RPINFIVHYSSVG-----SVSSSKSIPFPNGKDRVSSLSRNAMKILKTA----NNFCFPCNRLSLSVTKFLKTSSDLGSIAAF 447          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A7J7PND9 (UmuC domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PND9_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 6.330e-21
Identity = 77/199 (38.69%), Postives = 111/199 (55.78%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAG--GHVRLNASRST--AMPQASFQKRV--DAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGG 193
            M +LPL K++GLGGKLG+Q+E LG  TAG A  L  E L   LG +  A++V+  VRGID+  V+ +D  KS+ + K+F+P +SL  ++ QWL +L+ EL+ RM  D   + R  R+L + +R    G  G  R    RS   AMP A+ +  V  D I  AAL + +          +P+  + L AT F    E+GG
Sbjct:  365 MQDLPLGKVKGLGGKLGQQLEALGAPTAGAAAGLAYEALLAHLGPK--ARWVFNAVRGIDDEPVMPKDKVKSINSCKSFEPLSSLPPLQ-QWLGVLAAELAERMAEDEAEHARRPRSLVLQYRSAAPGLSGGSRGTPDRSVRGAMPPAASKDGVSADVITVAALQLFRRIK----PAPWPVVRLALVATEF---VEQGG 553          
BLAST of Ggra5213.t1 vs. uniprot
Match: DNA polymerase eta n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003598AE0 (DNA polymerase eta n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003598AE0)

HSP 1 Score: 102 bits (253), Expect = 1.530e-20
Identity = 76/209 (36.36%), Postives = 114/209 (54.55%), Query Frame = 0
Query:    2 TELPLRKLRGLGGKLGKQI-EDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQ--WLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEG---QFSFPISFIGLTATNFFARAERGGSIKEYFASSAS 204
            + LPL+K+R LGGKLG  + +DL + T G+ T+L  E L+K+ G QK+  ++Y   RGI+   V  R   KS+   KNF+ +  L+T EK   WL  L++E+S R+  D E N R A++LTV  R ++ G      +S S +   A  +   D I A A ++LK      G   Q+  PI+ + L+A  F  + E   +I   FAS+ S
Sbjct:  232 SNLPLQKIRHLGGKLGAFLTDDLQLQTMGDLTRLTEEELQKQCG-QKTGSWLYHACRGIETEPVSARQLPKSIGCGKNFRGKEQLDTKEKVKFWLSELTKEISERLFKDKELNKRTAKSLTVHLRYQIPGA-----SSSSASRACALIRYDHDKICADAFALLKQFQTSPGHSAQWIPPITSLNLSAGKFTEQGENQ-TISSLFASAPS 433          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A7S0XMC3 (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XMC3_9RHOD)

HSP 1 Score: 101 bits (252), Expect = 1.850e-20
Identity = 70/193 (36.27%), Postives = 106/193 (54.92%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLG---NQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETN-NRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRVDAIIAAALSVLKNAMFKEGQFS-FPISFIGLTATNFFAR 188
            + ELP+ +LR LGGKLG  + + G+ TAG+   +  + L   L    + ++  FVY  VRG D +EV +R  +KS+LAAK F  E     V + W  +L+EEL  R+ + +E +  R  RTLT+SF+       +  +A     MP  +   R DA++A A+  L++   +       P SF+GLTATNF A+
Sbjct:  403 VAELPIERLRFLGGKLGGALREKGMRTAGDVRSMPRDALAALLKLPCDDRNVSFVYDAVRGEDHTEVRDRQLSKSMLAAKRFSVETKWAGVSR-WAAVLAEELVERLKSHAERHPERAPRTLTISFKCTALPSTLTRSAPL---MPIHAI--RADAVLALAMRTLQSVHDRNSSSRVLPCSFLGLTATNFAAQ 589          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A383VWR6 (UmuC domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWR6_TETOB)

HSP 1 Score: 100 bits (250), Expect = 3.810e-20
Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFRVKMAG--GHVRLNASRST--AMPQASFQKRV--DAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGG 193
            M +LPL K++GLGGKLG  +E +G  TAG A  L  E L    G +  A++V+  VRGIDE  V  +D  KS+ + K+F+P +SL  ++ QWL +L+ EL+ RM  D + + R  R+L + +R    G  G  R    RS   AMP A+ +  V  D I AAAL + +          +P+  + L AT F    E+GG
Sbjct:  334 MQDLPLGKVKGLGGKLGAALEAMGAATAGAAAGLRYEALLAHFGPK--ARWVFNTVRGIDEEPVTPKDKVKSINSCKSFEPLSSLPPLQ-QWLGVLAAELAERMAEDEDEHARRPRSLVLQYRSAAPGLSGGSRGTPDRSIRGAMPPAASKDGVSADVIAAAALQLFRRIT----PAPWPVVRLALVATEF---VEKGG 522          
BLAST of Ggra5213.t1 vs. uniprot
Match: A0A0U9HQB4 (Putative Y-family DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQB4_KLENI)

HSP 1 Score: 92.4 bits (228), Expect = 3.050e-17
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    1 MTELPLRKLRGLGGKLGKQIED-LGIHTAGEATKLDMETLEKKLGNQKSAQFVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEELSNRMNADSETNNRDARTLTVSFR 123
            M + P+RK+R LGGK+GK++ D LG  TAG+  K+    L +KLG+ K   +V++ VRGI +  V  R  +KS+LAAK++   NS+E V + WL LLS EL+ R+  D + N R  +T  + +R
Sbjct:  240 MKDFPMRKIRNLGGKMGKELCDTLGCETAGDVQKIPEAVLIEKLGD-KMGPWVFRAVRGIHDEPVQTRQISKSMLAAKSYSLTNSIEDV-RHWLRLLSMELAARIEYDVKLNKRRPKTFHLYYR 361          
The following BLAST results are available for this feature:
BLAST of Ggra5213.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J7X85.170e-11665.87DNA polymerase eta n=1 Tax=Gracilariopsis chorda T... [more]
R7QT442.220e-7251.51UmuC domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S3EFR31.100e-3338.20Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2P6UZV93.320e-2134.38DNA RNA polymerase n=1 Tax=Micractinium conductrix... [more]
M2WZS14.550e-2136.68DNA polymerase eta subunit n=1 Tax=Galdieria sulph... [more]
A0A7J7PND96.330e-2138.69UmuC domain-containing protein n=1 Tax=Scenedesmus... [more]
DNA polymerase eta n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003598AE01.530e-2036.36DNA polymerase eta n=1 Tax=Aplysia californica Tax... [more]
A0A7S0XMC31.850e-2036.27Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A383VWR63.810e-2038.19UmuC domain-containing protein n=1 Tax=Tetradesmus... [more]
A0A0U9HQB43.050e-1742.74Putative Y-family DNA polymerase n=1 Tax=Klebsormi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 215..235
NoneNo IPR availableGENE3D1.10.150.20coord: 6..62
e-value: 1.9E-14
score: 55.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..278
NoneNo IPR availablePANTHERPTHR45873DNA POLYMERASE ETAcoord: 1..275
IPR036775DNA polymerase, Y-family, little finger domain superfamilyGENE3D3.30.1490.100coord: 64..187
e-value: 5.7E-25
score: 90.0
IPR036775DNA polymerase, Y-family, little finger domain superfamilySUPERFAMILY100879Lesion bypass DNA polymerase (Y-family), little finger domaincoord: 70..186
IPR017961DNA polymerase, Y-family, little finger domainPFAMPF11799IMS_Ccoord: 70..190
e-value: 1.4E-10
score: 41.7
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:780454..781335 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5213.t1Ggra5213.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 780454..781335 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5213.t1 ID=Ggra5213.t1|Name=Ggra5213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MTELPLRKLRGLGGKLGKQIEDLGIHTAGEATKLDMETLEKKLGNQKSAQ
FVYKCVRGIDESEVVERDATKSLLAAKNFKPENSLETVEKQWLPLLSEEL
SNRMNADSETNNRDARTLTVSFRVKMAGGHVRLNASRSTAMPQASFQKRV
DAIIAAALSVLKNAMFKEGQFSFPISFIGLTATNFFARAERGGSIKEYFA
SSASNSDSHPGSNERKEMRSEADREEEHRRLLQERADRILALKLHREESN
RGIKKPGVKSSRGAKKSTGSNRTKVKSGITTVDMFFKAKNGKS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036775DNA_pol_Y-fam_lit_finger_sf
IPR017961DNA_pol_Y-fam_little_finger
IPR043502DNA/RNA_pol_sf