Ggra5118.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5118.t1
Unique NameGgra5118.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Homology
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BLAST of Ggra5118.t1 vs. uniprot
Match: A0A2V3J6Z8 (Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Z8_9FLOR)

HSP 1 Score: 696 bits (1796), Expect = 5.760e-248
Identity = 345/474 (72.78%), Postives = 400/474 (84.39%), Query Frame = 0 
Query:    1 MGALVNATEHTPEHPNALKIHVALDQNANRNPLEFLRLLHTLSGTNPNSIAPVLTGLTHHTVNLHLHPPTSPLHQLTRAALKLDLHAISPTDKAPNPALQTFVTFLTNLISAHADYIEPVFKMIAKRVFTMSAAQHSLLAAMDTVIFSTLRTYPRSRNVLLSTMQSSYPHPVRPPVEHLSFSRATLRLAKEPALAPSLLVTLFERLAAIEALVPQKVFAGDS-SELCMEAERLEHVLLELCSFFEQRGSLEAAFTAYQIFIVPVDAARFSPYSLLFAATVSDSGDVLHEVVERLWQSFHNPSTPLRIRERFLEHSAAIVLRAKAYGPKRVIKWISRLAAWLNTYIDAARGSDFIDVDVHSSFYTGVAVLLRVMTGRSDAFDDGEMLNNMRLYRIISCSMNPTLMLPGPLVDAFAETMSSKCEVDYRDVVQENEGRFPPSRTVYGSKNEYRCRVVGPDVSLPRFRKRLEEYVLWD 473
            MGA VNA  H P HPNALKIHVALDQNANRNPLEFLRLLH LSGTNP+SI P+LTGLTHHTVNLHL+P TSPLHQLTRAALKLDLHAISPTDK PNPALQ FV+FLTNLISAHADYIEPVF+MI KR FTMSAA+  LL+AM +V+FS L T+PR+R++LLST+QSSYPHPVRPP EHL F+RATLRLAKEP L  SLLVTLFER+AAIEALVP  VFA DS S+L MEAERLE VLLELC+FFE+ GS+EAAF+AYQ+FIVP+DA R+SPY+LLF A V+     LH++VERLWQSFH+P TP R+RERFLEH+ ++VLRA+ Y    V++W++RLA WLN YIDAARG+D IDVD+H SFYT VAVLLRVMT R +AF D E+L+NMRLYRI+S  MNP ++LP  LVD+F ET+ + C VDYRDV+ E+EG FPPSRT+YGSKNE+  R+V PD  LPR R RL  +VLWD
Sbjct:    1 MGAAVNALGHVPAHPNALKIHVALDQNANRNPLEFLRLLHALSGTNPHSITPILTGLTHHTVNLHLYPSTSPLHQLTRAALKLDLHAISPTDKTPNPALQAFVSFLTNLISAHADYIEPVFQMIVKRAFTMSAARDCLLSAMHSVVFSALHTHPRARSILLSTVQSSYPHPVRPPAEHLCFARATLRLAKEPHLVSSLLVTLFERVAAIEALVPHTVFANDSRSQLGMEAERLEVVLLELCNFFEEGGSVEAAFSAYQMFIVPMDAVRYSPYALLFGAAVAKDTSTLHDIVERLWQSFHDPCTPSRLRERFLEHAGSMVLRARCYNSDHVVRWVARLAGWLNAYIDAARGNDVIDVDIHLSFYTAVAVLLRVMTRRCEAFKDEEVLSNMRLYRIVSSGMNPFVVLPRALVDSFVETVMNTCGVDYRDVIVESEGVFPPSRTLYGSKNEFVYRIVCPDFELPRLRARLNAHVLWD 474
The following BLAST results are available for this feature:
BLAST of Ggra5118.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6Z85.760e-24872.78Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 255..415
e-value: 6.1E-9
score: 35.0
coord: 20..211
e-value: 2.6E-10
score: 39.5
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 34..231
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 254..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 486..503
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..503
NoneNo IPR availablePANTHERPTHR12790:SF0RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATEDcoord: 34..231
NoneNo IPR availablePANTHERPTHR12790:SF0RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATEDcoord: 254..431

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:509703..511214 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5118.t1Ggra5118.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 509703..511214 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5118.t1 ID=Ggra5118.t1|Name=Ggra5118.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MGALVNATEHTPEHPNALKIHVALDQNANRNPLEFLRLLHTLSGTNPNSI
APVLTGLTHHTVNLHLHPPTSPLHQLTRAALKLDLHAISPTDKAPNPALQ
TFVTFLTNLISAHADYIEPVFKMIAKRVFTMSAAQHSLLAAMDTVIFSTL
RTYPRSRNVLLSTMQSSYPHPVRPPVEHLSFSRATLRLAKEPALAPSLLV
TLFERLAAIEALVPQKVFAGDSSELCMEAERLEHVLLELCSFFEQRGSLE
AAFTAYQIFIVPVDAARFSPYSLLFAATVSDSGDVLHEVVERLWQSFHNP
STPLRIRERFLEHSAAIVLRAKAYGPKRVIKWISRLAAWLNTYIDAARGS
DFIDVDVHSSFYTGVAVLLRVMTGRSDAFDDGEMLNNMRLYRIISCSMNP
TLMLPGPLVDAFAETMSSKCEVDYRDVVQENEGRFPPSRTVYGSKNEYRC
RVVGPDVSLPRFRKRLEEYVLWDPIREGDGEDEVEEGEKKNEKMDYDTDG
EGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3